nLTT: Calculate the NLTT Statistic

Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.

Version: 1.4.8
Imports: ape, coda, testit
Suggests: TreeSim, DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testthat, DAISIE
Published: 2022-05-24
Author: Thijs Janzen [aut, cre], Richèl J.C. Bilderbeek ORCID iD [aut], Pedro Neves [ctb]
Maintainer: Thijs Janzen <thijsjanzen at gmail.com>
BugReports: https://github.com/thijsjanzen/nLTT/issues
License: GPL-2
URL: https://github.com/thijsjanzen/nLTT
NeedsCompilation: no
CRAN checks: nLTT results

Documentation:

Reference manual: nLTT.pdf
Vignettes: How to visualize nLTT values distributions
nltt_diff functions
How to plot multiple nLTTs and their average
How to stretch an nLTT timepoints matrix
Trees with a root edge
Walkthrough

Downloads:

Package source: nLTT_1.4.8.tar.gz
Windows binaries: r-devel: nLTT_1.4.8.zip, r-release: nLTT_1.4.8.zip, r-oldrel: nLTT_1.4.8.zip
macOS binaries: r-release (arm64): nLTT_1.4.8.tgz, r-oldrel (arm64): nLTT_1.4.8.tgz, r-release (x86_64): nLTT_1.4.8.tgz, r-oldrel (x86_64): nLTT_1.4.8.tgz
Old sources: nLTT archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=nLTT to link to this page.