A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| A3 | Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |
| AalenJohansen | Conditional Aalen-Johansen Estimation |
| AATtools | Reliability and Scoring Routines for the Approach-Avoidance Task |
| ABACUS | Apps Based Activities for Communicating and Understanding Statistics |
| abasequence | Coding 'ABA' Patterns for Sequence Data |
| abbreviate | Readable String Abbreviation |
| abc | Tools for Approximate Bayesian Computation (ABC) |
| abc.data | Data Only: Tools for Approximate Bayesian Computation (ABC) |
| ABC.RAP | Array Based CpG Region Analysis Pipeline |
| ABCanalysis | Computed ABC Analysis |
| abclass | Angle-Based Large-Margin Classifiers |
| ABCoptim | Implementation of Artificial Bee Colony (ABC) Optimization |
| ABCp2 | Approximate Bayesian Computational Model for Estimating P2 |
| abcrf | Approximate Bayesian Computation via Random Forests |
| abcrlda | Asymptotically Bias-Corrected Regularized Linear Discriminant Analysis |
| abctools | Tools for ABC Analyses |
| abd | The Analysis of Biological Data |
| abdiv | Alpha and Beta Diversity Measures |
| abe | Augmented Backward Elimination |
| aberrance | Detect Aberrant Behavior in Test Data |
| abess | Fast Best Subset Selection |
| abglasso | Adaptive Bayesian Graphical Lasso |
| ABHgenotypeR | Easy Visualization of ABH Genotypes |
| abind | Combine Multidimensional Arrays |
| abjData | Databases Used Routinely by the Brazilian Jurimetrics Association |
| abjutils | Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association |
| ablasso | Arellano-Bond LASSO Estimator for Dynamic Linear Panel Models |
| ABM | Agent Based Model Simulation Framework |
| abmR | Agent-Based Models in R |
| abn | Modelling Multivariate Data with Additive Bayesian Networks |
| abnormality | Measure a Subject's Abnormality with Respect to a Reference Population |
| abodOutlier | Angle-Based Outlier Detection |
| ABPS | The Abnormal Blood Profile Score to Detect Blood Doping |
| abseil | 'C++' Header Files from 'Abseil' |
| absorber | Variable Selection in Nonparametric Models using B-Splines |
| abstr | R Interface to the A/B Street Transport System Simulation Software |
| abstractr | An R-Shiny Application for Creating Visual Abstracts |
| ABSurvTDC | Survival Analysis using Time Dependent Covariate for Animal Breeding |
| abtest | Bayesian A/B Testing |
| abundant | High-Dimensional Principal Fitted Components and Abundant Regression |
| Ac3net | Inferring Directional Conservative Causal Core Gene Networks |
| ACA | Abrupt Change-Point or Aberration Detection in Point Series |
| AcademicThemes | Colour Plots with Palettes from Academic Institutions |
| academictwitteR | Access the Twitter Academic Research Product Track V2 API Endpoint |
| acc | Exploring Accelerometer Data |
| acca | A Canonical Correlation Analysis with Inferential Guaranties |
| accelerometry | Functions for Processing Accelerometer Data |
| accelmissing | Missing Value Imputation for Accelerometer Data |
| AccelStab | Accelerated Stability Kinetic Modelling |
| accept | The Acute COPD Exacerbation Prediction Tool (ACCEPT) |
| AcceptanceSampling | Creation and Evaluation of Acceptance Sampling Plans |
| AcceptReject | Acceptance-Rejection Method for Generating Pseudo-Random Observations |
| accessibility | Transport Accessibility Measures |
| accessr | Command Line Tools to Produce Accessible Documents using 'R Markdown' |
| accessrmd | Improving the Accessibility of 'rmarkdown' Documents |
| accrual | Bayesian Accrual Prediction |
| accrualPlot | Accrual Plots and Predictions for Clinical Trials |
| accSDA | Accelerated Sparse Discriminant Analysis |
| accucor | Natural Abundance Correction of Mass Spectrometer Data |
| accumulate | Split-Apply-Combine with Dynamic Groups |
| acdcquery | Query the Attentional Control Data Collection |
| acdcR | Agro-Climatic Data by County |
| ACDm | Tools for Autoregressive Conditional Duration Models |
| ACE.CoCo | Analysis of Correlated High-Dimensional Expression (ACE) Data |
| ace2fastq | ACE File to FASTQ Converter |
| acebayes | Optimal Bayesian Experimental Design using the ACE Algorithm |
| aceEditor | The 'Ace' Editor as a HTML Widget |
| ACEP | Analisis Computacional de Eventos de Protesta |
| acepack | ACE and AVAS for Selecting Multiple Regression Transformations |
| ACEsearch | 'ACE' Search Engine API |
| ACEsimFit | ACE Kin Pair Data Simulations and Model Fitting |
| ACEt | Estimating Dynamic Heritability and Twin Model Comparison |
| acfMPeriod | Robust Estimation of the ACF from the M-Periodogram |
| Achilles | Achilles Data Source Characterization |
| acid | Analysing Conditional Income Distributions |
| acled.api | Automated Retrieval of ACLED Conflict Event Data |
| ACNE | Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization |
| acnr | Annotated Copy-Number Regions |
| acopula | Modelling Dependence with Multivariate Archimax (or any User-Defined Continuous) Copulas |
| acoRn | Exclusion-Based Parentage Assignment Using Multilocus Genotype Data |
| AcousticNDLCodeR | Coding Sound Files for Use with NDL |
| acp | Autoregressive Conditional Poisson |
| acro | A Tool for Automating the Statistical Disclosure Control of Research Outputs |
| acroname | Engine for Acronyms and Initialisms |
| AcrossTic | A Cost-Minimal Regular Spanning Subgraph with TreeClust |
| acs | Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census |
| acss | Algorithmic Complexity for Short Strings |
| acss.data | Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |
| ACSSpack | ACSS, Corresponding ACSS, and GLP Algorithm |
| ACSWR | A Companion Package for the Book "A Course in Statistics with R" |
| act | Aligned Corpus Toolkit |
| ACTCD | Asymptotic Classification Theory for Cognitive Diagnosis |
| ActCR | Extract Circadian Rhythms Metrics from Actigraphy Data |
| actel | Acoustic Telemetry Data Analysis |
| ActFrag | Activity Fragmentation Metrics Extracted from Minute Level Activity Data |
| actilifecounts | Generate Activity Counts from Raw Accelerometer Data |
| ActiSleep | Sleep Duration Estimate Algorithm |
| activAnalyzer | A 'Shiny' App to Analyze Accelerometer-Measured Daily Physical Behavior Data |
| activatr | Utilities for Parsing and Plotting Activities |
| ActiveDriver | Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites |
| activegp | Gaussian Process Based Design and Analysis for the Active Subspace Method |
| ActivePathways | Integrative Pathway Enrichment Analysis of Multivariate Omics Data |
| activity | Animal Activity Statistics |
| ActivityIndex | Activity Index Calculation using Raw 'Accelerometry' Data |
| activPAL | Advanced Processing and Chart Generation from activPAL Events Files |
| actLifer | Creating Actuarial Life Tables |
| actogrammr | Read in Activity Data and Plot Actograms |
| actuar | Actuarial Functions and Heavy Tailed Distributions |
| actuaRE | Handling Hierarchically Structured Risk Factors using Random Effects Models |
| ActuarialM | Computation of Actuarial Measures Using Bell G Family |
| actuaryr | Develop Actuarial Models |
| actxps | Create Actuarial Experience Studies: Prepare Data, Summarize Results, and Create Reports |
| AcuityView | A Package for Displaying Visual Scenes as They May Appear to an Animal with Lower Acuity |
| acumos | 'Acumos' R Interface |
| ACV | Optimal Out-of-Sample Forecast Evaluation and Testing under Stationarity |
| ACWR | Acute Chronic Workload Ratio Calculation |
| ada | The R Package Ada for Stochastic Boosting |
| adabag | Applies Multiclass AdaBoost.M1, SAMME and Bagging |
| adace | Estimator of the Adherer Average Causal Effect |
| adagio | Discrete and Global Optimization Routines |
| adaHuber | Adaptive Huber Estimation and Regression |
| adamethods | Archetypoid Algorithms and Anomaly Detection |
| adana | Adaptive Nature-Inspired Algorithms for Hybrid Genetic Optimization |
| AdapSamp | Adaptive Sampling Algorithms |
| adapt4pv | Adaptive Approaches for Signal Detection in Pharmacovigilance |
| adaptalint | Check Code Style Painlessly |
| adaptDiag | Bayesian Adaptive Designs for Diagnostic Trials |
| AdaptGauss | Gaussian Mixture Models (GMM) |
| adaptiveGPCA | Adaptive Generalized PCA |
| adaptivetau | Tau-Leaping Stochastic Simulation |
| adaptIVPT | Adaptive Bioequivalence Design for In-Vitro Permeation Tests |
| adaptMCMC | Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler |
| adaptMT | Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information |
| adaptr | Adaptive Trial Simulator |
| ADAPTS | Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells |
| adaptsmoFMRI | Adaptive Smoothing of FMRI Data |
| adaptTest | Adaptive Two-Stage Tests |
| adaR | A Fast 'WHATWG' Compliant URL Parser |
| AdaSampling | Adaptive Sampling for Positive Unlabeled and Label Noise Learning |
| adass | Adaptive Smoothing Spline (AdaSS) Estimator for the Function-on-Function Linear Regression |
| adbcdrivermanager | 'Arrow' Database Connectivity ('ADBC') Driver Manager |
| adbcpostgresql | 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver |
| adbcsqlite | 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver |
| adbi | 'DBI' Compliant Database Access Using 'ADBC' |
| adc | Calculate Antecedent Discharge Conditions |
| ADCT | Adaptive Design in Clinical Trials |
| add2ggplot | Add to 'ggplot2' |
| addhaz | Binomial and Multinomial Additive Hazard Models |
| addhazard | Fit Additive Hazards Models for Survival Analysis |
| addinsJoaoMelo | Addins Made of Joao Melo |
| addinslist | Discover and Install Useful RStudio Addins |
| addinsOutline | 'RStudio' Addins for Show Outline of a R Markdown/'LaTeX' Project |
| additive | Bindings for Additive TidyModels |
| additiveDEA | Additive Data Envelopment Analysis Models |
| additivityTests | Additivity Tests in the Two Way Anova with Single Sub-Class Numbers |
| addreg | Additive Regression for Discrete Data |
| addScales | Adds Labeled Center Line and Scale Lines/Regions to Trellis Plots |
| ADDT | Analysis of Accelerated Destructive Degradation Test Data |
| ade4 | Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences |
| ade4TkGUI | 'ade4' Tcl/Tk Graphical User Interface |
| adea | Alternate DEA Package |
| adegenet | Exploratory Analysis of Genetic and Genomic Data |
| adegraphics | An S4 Lattice-Based Package for the Representation of Multivariate Data |
| adehabitatHR | Home Range Estimation |
| adehabitatHS | Analysis of Habitat Selection by Animals |
| adehabitatLT | Analysis of Animal Movements |
| adehabitatMA | Tools to Deal with Raster Maps |
| adelie | Group Lasso and Elastic Net Solver for Generalized Linear Models |
| adephylo | Exploratory Analyses for the Phylogenetic Comparative Method |
| adepro | A 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles |
| adept | Adaptive Empirical Pattern Transformation |
| adeptdata | Accelerometry Data Sets |
| AdequacyModel | Adequacy of Probabilistic Models and General Purpose Optimization |
| ADER | Data Analysis in Ecology |
| adespatial | Multivariate Multiscale Spatial Analysis |
| adestr | Estimation in Optimal Adaptive Two-Stage Designs |
| adfExplorer | Import from and Export to Amiga Disk Files |
| adformR | Get Adform Ads Data via the 'Windsor.ai' API |
| ADGofTest | Anderson-Darling GoF test |
| adheRenceRX | Assess Medication Adherence from Pharmaceutical Claims Data |
| AdhereR | Adherence to Medications |
| AdhereRViz | Adherence to Medications |
| adimpro | Adaptive Smoothing of Digital Images |
| AdIsMF | Adsorption Isotherm Model Fitting |
| adiv | Analysis of Diversity |
| adjclust | Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix |
| adjROC | Computing Sensitivity at a Fix Value of Specificity and Vice Versa as Well as Bootstrap Metrics for ROC Curves |
| adjSURVCI | Parameter and Adjusted Probability Estimation for Right-Censored Data |
| adjustedcranlogs | Remove Automated and Repeated Downloads from 'RStudio' 'CRAN' Download Logs |
| adjustedCurves | Confounder-Adjusted Survival Curves and Cumulative Incidence Functions |
| adklakedata | Adirondack Long-Term Lake Data |
| adlift | An Adaptive Lifting Scheme Algorithm |
| ADLP | Accident and Development Period Adjusted Linear Pools for Actuarial Stochastic Reserving |
| admiral | ADaM in R Asset Library |
| admiral.test | Test Data for the 'admiral' Package |
| admiraldev | Utility Functions and Development Tools for the Admiral Package Family |
| admiralonco | Oncology Extension Package for ADaM in 'R' Asset Library |
| admiralophtha | ADaM in R Asset Library - Ophthalmology |
| admiralpeds | Pediatrics Extension Package for ADaM in 'R' Asset Library |
| admiralvaccine | Vaccine Extension Package for ADaM in 'R' Asset Library |
| admisc | Adrian Dusa's Miscellaneous |
| AdMit | Adaptive Mixture of Student-t Distributions |
| admix | Package Admix for Admixture (aka Contamination) Models |
| admixr | An Interface for Running 'ADMIXTOOLS' Analyses |
| ADMM | Algorithms using Alternating Direction Method of Multipliers |
| admmDensestSubmatrix | Alternating Direction Method of Multipliers to Solve Dense Dubmatrix Problem |
| ADMMsigma | Penalized Precision Matrix Estimation via ADMM |
| admtools | Estimate and Manipulate Age-Depth Models |
| ADMUR | Ancient Demographic Modelling Using Radiocarbon |
| adnuts | No-U-Turn MCMC Sampling for 'ADMB' Models |
| adobeanalyticsr | R Client for 'Adobe Analytics' API 2.0 |
| adoptr | Adaptive Optimal Two-Stage Designs |
| ADP | Adoption Probability, Triers and Users Rate of a New Product |
| ADPclust | Fast Clustering Using Adaptive Density Peak Detection |
| ADPF | Use Least Squares Polynomial Regression and Statistical Testing to Improve Savitzky-Golay |
| adproclus | Additive Profile Clustering Algorithms |
| adpss | Design and Analysis of Locally or Globally Efficient Adaptive Designs |
| ads | Spatial Point Patterns Analysis |
| adsDataHubR | Google Ads Data Hub API Client |
| ADTSA | Time Series Analysis |
| AdvancedBasketballStats | Advanced Basketball Statistics |
| AdvBinomApps | Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information |
| AdvDif4 | Solving 1D Advection Bi-Flux Diffusion Equation |
| adventr | Interactive R Tutorials to Accompany Field (2016), "An Adventure in Statistics" |
| ADVICE | Automatic Direct Variable Selection via Interrupted Coefficient Estimation |
| adw | Angular Distance Weighting Interpolation |
| adwave | Wavelet Analysis of Genomic Data from Admixed Populations |
| adwordsR | Access the 'Google Adwords' API |
| aebdata | Access Data from the Atlas do Estado Brasileiro |
| aeddo | Automated and Early Detection of Disease Outbreaks |
| AEDForecasting | Change Point Analysis in ARIMA Forecasting |
| aedseo | Automated and Early Detection of Seasonal Epidemic Onset |
| AEenrich | Adverse Event Enrichment Tests |
| aelab | Calculation of Greenhouse Gas Flux |
| AEP | Statistical Modelling for Asymmetric Exponential Power Distribution |
| AER | Applied Econometrics with R |
| AeRobiology | A Computational Tool for Aerobiological Data |
| AeroSampleR | Estimate Aerosol Particle Collection Through Sample Lines |
| AF | Model-Based Estimation of Confounder-Adjusted Attributable Fractions |
| afc | Generalized Discrimination Score |
| afcolours | Government Analysis Function Recommended Accessible Colour Palette |
| afdx | Diagnosis Performance Using Attributable Fraction |
| afex | Analysis of Factorial Experiments |
| AFFECT | Accelerated Functional Failure Time Model with Error-Contaminated Survival Times |
| affinity | Raster Georeferencing, Grid Affine Transforms, Cell Abstraction |
| affinitymatrix | Estimation of Affinity Matrix |
| affluenceIndex | Affluence (Richness) Indices |
| AFheritability | The Attributable Fraction (AF) Described as a Function of Disease Heritability, Prevalence and Intervention Specific Factors |
| AFM | Atomic Force Microscope Image Analysis |
| afmToolkit | Functions for Atomic Force Microscope Force-Distance Curves Analysis |
| afpt | Tools for Modelling of Animal Flight Performance |
| AFR | Toolkit for Regression Analysis of Kazakhstan Banking Sector Data |
| africamonitor | Africa Macroeconomic Monitor Database API |
| aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |
| afthd | Accelerated Failure Time for High Dimensional Data with MCMC |
| aftR2 | R-Squared Measure under Accelerated Failure Time (AFT) Models |
| aftsem | Semiparametric Accelerated Failure Time Model |
| afttest | Model Diagnostics for Accelerated Failure Time Models |
| ag5Tools | Toolbox for Downloading and Extracting Copernicus AgERA5 Data |
| agcounts | Calculate 'ActiGraph' Counts from Accelerometer Data |
| AGD | Analysis of Growth Data |
| ageg | Age Grouping Functions |
| agena.ai | R Wrapper for 'agena.ai' API |
| ageutils | Collection of Functions for Working with Age Intervals |
| agfh | Agnostic Fay-Herriot Model for Small Area Statistics |
| agghoo | Aggregated Hold-Out Cross Validation |
| AggregateR | Aggregate Numeric, Date and Categorical Variables |
| aggregation | p-Value Aggregation Methods |
| aggTrees | Aggregation Trees |
| aggutils | Utilities for Aggregating Probabilistic Forecasts |
| AGHmatrix | Relationship Matrices for Diploid and Autopolyploid Species |
| aghq | Adaptive Gauss Hermite Quadrature for Bayesian Inference |
| aglm | Accurate Generalized Linear Model |
| agop | Aggregation Operators and Preordered Sets |
| AGPRIS | AGricultural PRoductivity in Space |
| agRee | Various Methods for Measuring Agreement |
| AgreementInterval | Agreement Interval of Two Measurement Methods |
| agricolae | Statistical Procedures for Agricultural Research |
| agricolaeplotr | Visualization of Design of Experiments from the 'agricolae' Package |
| agridat | Agricultural Datasets |
| agrifeature | Agriculture Image Feature |
| agriTutorial | Tutorial Analysis of Some Agricultural Experiments |
| agriutilities | Utilities for Data Analysis in Agriculture |
| agriwater | Evapotranspiration and Energy Fluxes Spatial Analysis |
| agrmt | Calculate Concentration and Dispersion in Ordered Rating Scales |
| AgroR | Experimental Statistics and Graphics for Agricultural Sciences |
| AgroReg | Regression Analysis Linear and Nonlinear for Agriculture |
| agrostab | Stability Analysis for Agricultural Research |
| AgroTech | Data Analysis of Pesticide Application Technology |
| ags | Crosswalk Municipality and District Statistics in Germany |
| agtboost | Adaptive and Automatic Gradient Boosting Computations |
| agua | 'tidymodels' Integration with 'h2o' |
| agvgd | An R Implementation of the 'Align-GVGD' Method |
| ahaz | Regularization for Semiparametric Additive Hazards Regression |
| AHM | Additive Heredity Model: Method for the Mixture-of-Mixtures Experiments |
| AHMbook | Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' Vols 1 and 2 |
| ahMLE | Methods for the Additive Hazard Model |
| ahnr | An Implementation of the Artificial Hydrocarbon Networks |
| AhoCorasickTrie | Fast Searching for Multiple Keywords in Multiple Texts |
| AHPGaussian | New Multicriteria Method: AHPGaussian |
| AHPhybrid | AHP Hybrid Method |
| ahpsurvey | Analytic Hierarchy Process for Survey Data |
| AHPtools | Consistency in the Analytic Hierarchy Process |
| ahptopsis2n | Hybrid Method for Multiple Criteria Decision-Making (MCDM) |
| AHPWR | Compute Analytic Hierarchy Process |
| AHSurv | Flexible Parametric Accelerated Hazards Models |
| ahw | Calculates Continuous Time Likelihood Ratio Weights Assuming Multiplicative Intensity Models and Additive Hazard Models |
| ai | Build, Predict and Analyse Artificial Intelligence Models |
| aIc | Testing for Compositional Pathologies in Datasets |
| AICcmodavg | Model Selection and Multimodel Inference Based on (Q)AIC(c) |
| AICcPermanova | Model Selection of PERMANOVA Models Using AICc |
| AID | Box-Cox Power Transformation |
| aidar | Tools for Reading AIDA Files |
| aides | Additive Information & Details of Evidence Synthesis |
| aifeducation | Artificial Intelligence for Education |
| AIFFtools | Read AIFF Files and Convert to WAVE Format |
| aihuman | Experimental Evaluation of Algorithm-Assisted Human Decision-Making |
| aimPlot | Create Pie Like Plot for Completeness |
| aimsir17 | Irish Weather Observing Stations Hourly Records for 2017 |
| aion | Archaeological Time Series |
| AIPW | Augmented Inverse Probability Weighting |
| air | AI Assistant to Write and Understand R Code |
| aire.zmvm | Download Mexico City Pollution, Wind, and Temperature Data |
| AirExposure | Exposure Model to Air Pollutants Based on Mobility and Daily Activities |
| airGR | Suite of GR Hydrological Models for Precipitation-Runoff Modelling |
| airGRdatasets | Hydro-Meteorological Catchments Datasets for the 'airGR' Packages |
| airGRdatassim | Ensemble-Based Data Assimilation with GR Hydrological Models |
| airGRiwrm | 'airGR' Integrated Water Resource Management |
| airGRteaching | Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included) |
| aiRly | R Wrapper for 'Airly' API |
| AirMonitor | Air Quality Data Analysis |
| airnow | Retrieve 'AirNow' Air Quality Observations and Forecasts |
| airportr | Convenience Tools for Working with Airport Data |
| airports | Data on Airports |
| airqualityES | Air Quality Measurements in Spain from 2011 to 2018 |
| airr | AIRR Data Representation Reference Library |
| airt | Evaluation of Algorithm Collections Using Item Response Theory |
| aiRthermo | Atmospheric Thermodynamics and Visualization |
| aisoph | Additive Isotonic Proportional Hazards Model |
| AIUQ | Ab Initio Uncertainty Quantification |
| ajv | Another JSON Schema Validator |
| aka | Define Aliases for R Expressions |
| akc | Automatic Knowledge Classification |
| Ake | Associated Kernel Estimations |
| akiFlagger | Flags Acute Kidney Injury (AKI) |
| akima | Interpolation of Irregularly and Regularly Spaced Data |
| akmbiclust | Alternating K-Means Biclustering |
| alabama | Constrained Nonlinear Optimization |
| alakazam | Immunoglobulin Clonal Lineage and Diversity Analysis |
| alarmdata | Download, Merge, and Process Redistricting Data |
| ALassoSurvIC | Adaptive Lasso for the Cox Regression with Interval Censored and Possibly Left Truncated Data |
| albatross | PARAFAC Analysis of Fluorescence Excitation-Emission Matrices |
| aLBI | Estimating Length-Based Indicators for Fish Stock |
| albopictus | Age-Structured Population Dynamics Model |
| alcyon | Spatial Network Analysis |
| ald | The Asymmetric Laplace Distribution |
| ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |
| aldvmm | Adjusted Limited Dependent Variable Mixture Models |
| ale | Interpretable Machine Learning and Statistical Inference with Accumulated Local Effects (ALE) |
| ALEPlot | Accumulated Local Effects (ALE) Plots and Partial Dependence (PD) Plots |
| ALFAM2 | Dynamic Model of Ammonia Emission from Field-Applied Manure |
| aLFQ | Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data |
| alfr | Connectivity to 'Alfresco' Content Management Repositories |
| alfred | Downloading Time Series from ALFRED Database for Various Vintages |
| AlgDesign | Algorithmic Experimental Design |
| AlgebraicHaploPackage | Haplotype Two Snips Out of a Paired Group of Patients |
| algo | Implement an Address Search Auto Completion Menu on 'Shiny' Text Inputs Using the 'Algolia Places' 'Javascript' Library |
| algorithmia | Allows you to Easily Interact with the Algorithmia Platform |
| aliases2entrez | Converts Human gene symbols to entrez IDs |
| alien | Estimate Invasive and Alien Species (IAS) Introduction Rates |
| align | A Modified DTW Algorithm for Stratigraphic Time Series Alignment |
| AlignLV | Multiple Group Item Response Theory Alignment Helpers for 'lavaan' and 'mirt' |
| alkahest | Pre-Processing XY Data from Experimental Methods |
| allcontributors | Acknowledge all Contributors to a Project |
| alleHap | Allele Imputation and Haplotype Reconstruction from Pedigree Databases |
| allelematch | Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present |
| AlleleRetain | Allele Retention, Inbreeding, and Demography |
| AlleleShift | Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change |
| AllelicSeries | Allelic Series Test |
| allestimates | Effect Estimates from All Models |
| AllMetrics | Calculating Multiple Performance Metrics of a Prediction Model |
| allMT | Acute Lymphoblastic Leukemia Maintenance Therapy Analysis |
| allofus | Interface for 'All of Us' Researcher Workbench |
| allomr | Removing Allometric Effects of Body Size in Morphological Analysis |
| Allspice | RNA-Seq Profile Classifier |
| alluvial | Alluvial Diagrams |
| almanac | Tools for Working with Recurrence Rules |
| alone | Datasets from the Survival TV Series Alone |
| alookr | Model Classifier for Binary Classification |
| aloom | All Leave-One-Out Models |
| alpaca | Fit GLM's with High-Dimensional k-Way Fixed Effects |
| alpha.correction.bh | Benjamini-Hochberg Alpha Correction |
| alphabetr | Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells |
| alphaci | Confidence Intervals for Coefficient Alpha and Standardized Alpha |
| alphahull | Generalization of the Convex Hull of a Sample of Points in the Plane |
| alphaN | Set Alpha Based on Sample Size Using Bayes Factors |
| alphaOutlier | Obtain Alpha-Outlier Regions for Well-Known Probability Distributions |
| AlphaPart | Partition/Decomposition of Breeding Values by Paths of Information |
| alphashape3d | Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud |
| AlphaSimR | Breeding Program Simulations |
| alphastable | Inference for Stable Distribution |
| alphavantager | Lightweight Interface to the Alpha Vantage API |
| alqrfe | Adaptive Lasso Quantile Regression with Fixed Effects |
| alr4 | Data to Accompany Applied Linear Regression 4th Edition |
| ALS | Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) |
| ALSCPC | Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form |
| altadata | API Wrapper for Altadata.io |
| altair | Interface to 'Altair' |
| altdoc | Package Documentation Websites with 'Quarto', 'Docsify', 'Docute', or 'MkDocs' |
| AlteredPQR | Detection of Altered Protein Quantitative Relationships |
| altfuelr | Provides an Interface to the NREL Alternate Fuels Locator |
| altmeta | Alternative Meta-Analysis Methods |
| ALTopt | Optimal Experimental Designs for Accelerated Life Testing |
| altR2 | Alternative Estimators to Adjusted R-Squared |
| ALUES | Agricultural Land Use Evaluation System |
| amadeus | Accessing and Analyzing Large-Scale Environmental Data |
| amanida | Meta-Analysis for Non-Integral Data |
| amanpg | Alternating Manifold Proximal Gradient Method for Sparse PCA |
| amap | Another Multidimensional Analysis Package |
| amapGeocode | An Interface to the 'AutoNavi Maps' API Geocoding Services |
| amapro | Thin Wrapper for Mapping Library 'AMap' |
| AMAPVox | LiDAR Data Voxelisation |
| amazonadsR | Get Amazon Ads Data via the 'Windsor.ai' API |
| amazons3R | Get Amazon S3 Data via the 'Windsor.ai' API |
| amazonspR | Get Amazon Sp Data via the 'Windsor.ai' API |
| amberr | 'Amber' Electronic Data Capture Client |
| ambient | A Generator of Multidimensional Noise |
| ambit | Simulation and Estimation of Ambit Processes |
| AMCP | A Model Comparison Perspective |
| AMCTestmakeR | Generate LaTeX Code for Auto-Multiple-Choice (AMC) |
| Amelia | A Program for Missing Data |
| amelie | Anomaly Detection with Normal Probability Functions |
| amen | Additive and Multiplicative Effects Models for Networks and Relational Data |
| amerifluxr | Interface to 'AmeriFlux' Data Services |
| amerika | American Politics-Inspired Color Palette Generator |
| AmesHousing | The Ames Iowa Housing Data |
| ami | Checks for Various Computing Environments |
| AmigaFFH | Commodore Amiga File Format Handler |
| AMIM | Compute the Adjusted Market Inefficiency Measure |
| ammiBayes | Bayesian Ammi Model for Continuous Data |
| ammistability | Additive Main Effects and Multiplicative Interaction Model Stability Parameters |
| AMModels | Adaptive Management Model Manager |
| AmmoniaConcentration | Un-Ionized Ammonia Concentration |
| aMNLFA | Automated Moderated Nonlinear Factor Analysis Using 'M-plus' |
| AmoudSurv | Tractable Parametric Odds-Based Regression Models |
| amp | Statistical Test for the Multivariate Point Null Hypotheses |
| ampd | An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals |
| AmpGram | Prediction of Antimicrobial Peptides |
| ampir | Predict Antimicrobial Peptides |
| AMPLE | Shiny Apps to Support Capacity Building on Harvest Control Rules |
| AmpliconDuo | Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts |
| AMR | Antimicrobial Resistance Data Analysis |
| amregtest | Runs Allelematch Regression Tests |
| amscorer | Clinical Scores Calculator for Healthcare |
| amt | Animal Movement Tools |
| amVennDiagram5 | Interactive Venn Diagrams |
| AmyloGram | Prediction of Amyloid Proteins |
| anabel | Analysis of Binding Events + l |
| AnaCoDa | Analysis of Codon Data under Stationarity using a Bayesian Framework |
| Anaconda | Targeted Differential and Global Enrichment Analysis of Taxonomic Rank by Shared Asvs |
| anacor | Simple and Canonical Correspondence Analysis |
| analogsea | Interface to 'DigitalOcean' |
| analogue | Analogue and Weighted Averaging Methods for Palaeoecology |
| AnalysisLin | Exploratory Data Analysis |
| analyzer | Data Analysis and Automated R Notebook Generation |
| AnanseSeurat | Construct ANANSE GRN-Analysis Seurat |
| AncestryMapper | Assigning Ancestry Based on Population References |
| AnchorRegression | Perform AnchorRegression |
| and | Construct Natural-Language Lists with Internationalization |
| andrews | Various Andrews Curves |
| Andromeda | Asynchronous Disk-Based Representation of Massive Data |
| andurinha | Make Spectroscopic Data Processing Easier |
| anesrake | ANES Raking Implementation |
| AnglerCreelSurveySimulation | Simulate a Bus Route Creel Survey of Anglers |
| angstromATE | Imports Log Files from Angstrom Engineering Thermal Evaporator |
| angstroms | Tools for 'ROMS' the Regional Ocean Modeling System |
| aniDom | Inferring Dominance Hierarchies and Estimating Uncertainty |
| anim.plots | Simple Animated Plots for R |
| animalEKF | Extended Kalman Filters for Animal Movement |
| AnimalHabitatNetwork | Networks Characterising the Physical Configurations of Animal Habitats |
| AnimalSequences | Analyse Animal Sequential Behaviour and Communication |
| animate | A Web-Based Graphics Device for Animated Visualisations |
| animation | A Gallery of Animations in Statistics and Utilities to Create Animations |
| animbook | Visualizing Changes in Performance Measures and Demographic Affiliations using Animation |
| animint2 | Animated Interactive Grammar of Graphics |
| animl | A Collection of ML Tools for Conservation Research |
| anipaths | Animation of Multiple Trajectories with Uncertainty |
| aniSNA | Statistical Network Analysis of Animal Social Networks |
| aniview | Animate Shiny and R Markdown Content when it Comes into View |
| anMC | Compute High Dimensional Orthant Probabilities |
| ANN2 | Artificial Neural Networks for Anomaly Detection |
| anndata | 'anndata' for R |
| annmatrix | Annotated Matrix: Matrices with Persistent Row and Column Annotations |
| AnnoProbe | Annotate the Gene Symbols for Probes in Expression Array |
| annotater | Annotate Package Load Calls |
| AnnotationBustR | Extract Subsequences from GenBank Annotations |
| annotator | Image Annotation and Polygon Outlining using Free Drawing |
| AnnuityRIR | Annuity Random Interest Rates |
| anocva | A Non-Parametric Statistical Test to Compare Clustering Structures |
| ANOFA | Analyses of Frequency Data |
| anoint | Analysis of Interactions |
| ANOM | Analysis of Means |
| anomalize | Tidy Anomaly Detection |
| anomaly | Detecting Anomalies in Data |
| anomo | Analysis of Moderation with the Monte Carlo Confidence Interval Method |
| ANOPA | Analyses of Proportions using Anscombe Transform |
| ANOVAIREVA | Interactive Document for Working with Analysis of Variance |
| ANOVAShiny | Interactive Document for Working with Analysis of Variance |
| ANOVAShiny2 | Interactive Document for Working with Analysis of Variance |
| anovir | Analysis of Virulence |
| anscombiser | Create Datasets with Identical Summary Statistics |
| ANSM5 | Functions and Data for the Book "Applied Nonparametric Statistical Methods", 5th Edition |
| AntAngioCOOL | Anti-Angiogenic Peptide Prediction |
| antaresEditObject | Edit an 'Antares' Simulation |
| antaresRead | Import, Manipulate and Explore the Results of an 'Antares' Simulation |
| anthro | Computation of the WHO Child Growth Standards |
| anthroplus | Computation of the WHO 2007 References for School-Age Children and Adolescents (5 to 19 Years) |
| AnthropMMD | An R Package for the Mean Measure of Divergence (MMD) |
| Anthropometry | Statistical Methods for Anthropometric Data |
| AntibodyTiters | Antibody Titer Analysis of Vaccinated Patients |
| anticlust | Subset Partitioning via Anticlustering |
| antitrust | Tools for Antitrust Practitioners |
| antiword | Extract Text from Microsoft Word Documents |
| AntMAN | Anthology of Mixture Analysis Tools |
| AnxietySleep | Sleep Quality and Anxiety in Confinement |
| anybadger | Create Custom Pipeline Badges |
| anyflights | Query 'nycflights13'-Like Air Travel Data for Given Years and Airports |
| anyLib | Install and Load Any Package from CRAN, Bioconductor or Github |
| anytime | Anything to 'POSIXct' or 'Date' Converter |
| ao | Alternating Optimization |
| AOboot | Bootstrapping in Different One-Way and Two-Way ANOVA |
| aod | Analysis of Overdispersed Data |
| aoos | Another Object Orientation System |
| aopdata | Data from the 'Access to Opportunities Project (AOP)' |
| Aoptbdtvc | A-Optimal Block Designs for Comparing Test Treatments with Controls |
| aoristic | Generates Aoristic Probability Distributions |
| aorsf | Accelerated Oblique Random Forests |
| aos | Animate on Scroll Library for 'shiny' |
| AOV1R | Inference in the Balanced One-Way ANOVA Model with Random Factor |
| AovBay | Classic, Nonparametric and Bayesian One-Way Analysis of Variance Panel |
| apa | Format Outputs of Statistical Tests According to APA Guidelines |
| apache.sedona | R Interface for Apache Sedona |
| ApacheLogProcessor | Process the Apache Web Server Log Files |
| APackOfTheClones | Visualization of Clonal Expansion for Single Cell Immune Profiles |
| apaTables | Create American Psychological Association (APA) Style Tables |
| apaText | Create R Markdown Text for Results in the Style of the American Psychological Association (APA) |
| apc | Age-Period-Cohort Analysis |
| APCalign | Resolving Plant Taxon Names Using the Australian Plant Census |
| APCanalysis | Analysis of Unreplicated Orthogonal Experiments using All Possible Comparisons |
| apcf | Adapted Pair Correlation Function |
| APCI | A New Age-Period-Cohort Model for Describing and Investigating Inter-Cohort Differences and Life Course Dynamics |
| apcluster | Affinity Propagation Clustering |
| aPCoA | Covariate Adjusted PCoA Plot |
| APCtools | Routines for Descriptive and Model-Based APC Analysis |
| apdesign | An Implementation of the Additive Polynomial Design Matrix |
| ape | Analyses of Phylogenetics and Evolution |
| aPEAR | Advanced Pathway Enrichment Analysis Representation |
| apercu | Quick Look at your Data |
| apex | Phylogenetic Methods for Multiple Gene Data |
| apexcharter | Create Interactive Chart with the JavaScript 'ApexCharts' Library |
| APFr | Multiple Testing Approach using Average Power Function (APF) and Bayes FDR Robust Estimation |
| aphid | Analysis with Profile Hidden Markov Models |
| aphylo | Statistical Inference and Prediction of Annotations in Phylogenetic Trees |
| api2lm | Functions and Data Sets for the Book "A Progressive Introduction to Linear Models" |
| APIS | Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents |
| apisensr | Interface to 'episensr' for Sensitivity Analysis of Epidemiological Results |
| aplore3 | Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013) |
| aplot | Decorate a 'ggplot' with Associated Information |
| aplotExtra | Creating Composite Plots using 'aplot' |
| aplpack | Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots', Slider Functions and Others |
| apmx | Automated Population Pharmacokinetic Dataset Assembly |
| apng | Convert Png Files into Animated Png |
| Apoderoides | Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree |
| apollo | Tools for Choice Model Estimation and Application |
| Apollonius | 2D Apollonius Graphs |
| appeears | Interface to 'AppEEARS' NASA Web Services |
| APPEstimation | Adjusted Prediction Model Performance Estimation |
| appleadsR | Get Apple Search Ads Data via the 'Windsor.ai' API |
| applicable | A Compilation of Applicability Domain Methods |
| AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |
| appnn | Amyloid Propensity Prediction Neural Network |
| apportion | Apportion Seats |
| appRiori | Code and Obtain Customized Planned Comparisons with 'appRiori' |
| approximator | Bayesian Prediction of Complex Computer Codes |
| approxmatch | Approximately Optimal Fine Balance Matching with Multiple Groups |
| approxOT | Approximate and Exact Optimal Transport Methods |
| appsflyeR | Get Data from 'Appsflyer' via the 'Windsor.ai' API |
| appsheet | An Interface to the 'AppSheet' API |
| aprean3 | Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998) |
| aprof | Amdahl's Profiler, Directed Optimization Made Easy |
| apsimx | Inspect, Read, Edit and Run 'APSIM' "Next Generation" and 'APSIM' Classic |
| apt | Asymmetric Price Transmission |
| APtools | Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times |
| apyramid | Visualize Population Pyramids Aggregated by Age |
| AQEval | Air Quality Evaluation |
| aqfig | Display Air Quality Model Output and Monitoring Data |
| AQLSchemes | Retrieving Acceptance Sampling Schemes |
| aqp | Algorithms for Quantitative Pedology |
| AquaAnalytix | Water Quality Analysis |
| AquaBEHER | Estimation and Prediction of Wet Season Calendar and Soil Water Balance for Agriculture |
| AQuadtree | Confidentiality of Spatial Point Data |
| AquaEnv | Integrated Development Toolbox for Aquatic Chemical Model Generation |
| AQuality | Water and Measurements Quality |
| AquaticLifeHistory | Life History Analysis Tools |
| aquodom | Access to Aquo domaintables from R (Dutch) |
| AR | Another Look at the Acceptance-Rejection Method |
| ar.matrix | Simulate Auto Regressive Data from Precision Matricies |
| arabic2kansuji | Convert Arabic Numerals to Kansuji |
| arabicStemR | Arabic Stemmer for Text Analysis |
| arakno | ARAchnid KNowledge Online |
| ArArRedux | Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data |
| arc | Association Rule Classification |
| ARCensReg | Fitting Univariate Censored Linear Regression Model with Autoregressive Errors |
| arcgeocoder | Geocoding with the 'ArcGIS' REST API Service |
| arcgisgeocode | A Robust Interface to ArcGIS 'Geocoding Services' |
| arcgislayers | An Interface to ArcGIS Data Services |
| arcgisplaces | Search for POIs using ArcGIS 'Places Service' |
| arcgisutils | ArcGIS Utility Functions |
| ArchaeoPhases | Post-Processing of Markov Chain Monte Carlo Simulations for Chronological Modelling |
| ArchaeoPhases.dataset | Data Sets for 'ArchaeoPhases' Vignettes |
| archdata | Example Datasets from Archaeological Research |
| archeofrag | Refitting and Spatial Analysis in Archaeology |
| archeoViz | Visualisation, Exploration, and Web Communication of Archaeological Spatial Data |
| archetypal | Finds the Archetypal Analysis of a Data Frame |
| archetyper | An Archetype for Data Mining and Data Science Projects |
| archetypes | Archetypal Analysis |
| archiDART | Plant Root System Architecture Analysis Using DART and RSML Files |
| archive | Multi-Format Archive and Compression Support |
| archiveRetriever | Retrieve Archived Web Pages from the 'Internet Archive' |
| archivist | Tools for Storing, Restoring and Searching for R Objects |
| archivist.github | Tools for Archiving, Managing and Sharing R Objects via GitHub |
| ArCo | Artificial Counterfactual Package |
| ARCokrig | Autoregressive Cokriging Models for Multifidelity Codes |
| arcpbf | Process ArcGIS Protocol Buffer FeatureCollections |
| arcpullr | Pull Data from an 'ArcGIS REST' API |
| arcpy | Interface to 'ArcGIS' 'Python' Modules |
| arctools | Processing and Physical Activity Summaries of Minute Level Activity Data |
| ArDec | Time Series Autoregressive-Based Decomposition |
| ARDECO | Annual Regional Database of the European Commission (ARDECO) |
| ARDL | ARDL, ECM and Bounds-Test for Cointegration |
| ardl.nardl | Linear and Nonlinear Autoregressive Distributed Lag Models: General-to-Specific Approach |
| ards | Creates Analysis Results Datasets |
| area | Calculate Area of Triangles and Polygons |
| areabiplot | Area Biplot |
| areal | Areal Weighted Interpolation |
| arealDB | Harmonise and Integrate Heterogeneous Areal Data |
| areaplot | Plot Stacked Areas and Confidence Bands as Filled Polygons |
| arena2r | Plots, Summary Statistics and Tools for Arena Simulation Users |
| arenar | Arena for the Exploration and Comparison of any ML Models |
| arf | Adversarial Random Forests |
| arfima | Fractional ARIMA (and Other Long Memory) Time Series Modeling |
| Argentum | Access and Import WMS and WFS Data from Argentine Organizations |
| argo | Accurate Estimation of Influenza Epidemics using Google Search Data |
| argoFloats | Analysis of Oceanographic Argo Floats |
| argonDash | Argon Shiny Dashboard Template |
| argonR | R Interface to Argon HTML Design |
| ARGOS | Automatic Regression for Governing Equations (ARGOS) |
| argosfilter | Argos Locations Filter |
| argparse | Command Line Optional and Positional Argument Parser |
| argparser | Command-Line Argument Parser |
| argus | Random Variate Generator for the Argus Distribution |
| ARHT | Adaptable Regularized Hotelling's T^2 Test for High-Dimensional Data |
| ari | Automated R Instructor |
| ARIbrain | All-Resolution Inference |
| aricode | Efficient Computations of Standard Clustering Comparison Measures |
| AriGaMyANNSVR | Hybrid ARIMA-GARCH and Two Specially Designed ML-Based Models |
| arima2 | Likelihood Based Inference for ARIMA Modeling |
| ARIMAANN | Time Series Forecasting using ARIMA-ANN Hybrid Model |
| arkdb | Archive and Unarchive Databases Using Flat Files |
| arkhe | Tools for Cleaning Rectangular Data |
| arlclustering | Exploring Social Network Structures Through Friendship-Driven Community Detection with Association Rules Mining |
| arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |
| ARMALSTM | Fitting of Hybrid ARMA-LSTM Models |
| armspp | Adaptive Rejection Metropolis Sampling (ARMS) via 'Rcpp' |
| arnie | "Arnie" box office records 1982-2014 |
| aroma.affymetrix | Analysis of Large Affymetrix Microarray Data Sets |
| aroma.apd | A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] |
| aroma.cn | Copy-Number Analysis of Large Microarray Data Sets |
| aroma.core | Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework |
| Arothron | Geometric Morphometric Methods and Virtual Anthropology Tools |
| ARPALData | Retrieving and Analyzing Air Quality and Weather Data from ARPA Lombardia |
| ARpLMEC | Censored Mixed-Effects Models with Different Correlation Structures |
| ARPobservation | Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes |
| arpr | Advanced R Pipes |
| aRpsDCA | Arps Decline Curve Analysis in R |
| arrangements | Fast Generators and Iterators for Permutations, Combinations, Integer Partitions and Compositions |
| arrApply | Apply a Function to a Margin of an Array |
| arrayhelpers | Convenience Functions for Arrays |
| arrg | Flexible Argument Parsing for R Scripts |
| arrow | Integration to 'Apache' 'Arrow' |
| arrowheadr | Make Custom Arrowheads |
| ars | Adaptive Rejection Sampling |
| arse | Area of Resilience to Stress Event |
| arsenal | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries |
| ART | Aligned Rank Transform for Nonparametric Factorial Analysis |
| artfima | ARTFIMA Model Estimation |
| arthistory | Art History Textbook Data |
| ARTofR | To Insert Title, Divider, and Block of Comments |
| ARTool | Aligned Rank Transform |
| artpack | Creates Generative Art Data |
| aRtsy | Generative Art with 'ggplot2' |
| arules | Mining Association Rules and Frequent Itemsets |
| arulesCBA | Classification Based on Association Rules |
| arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |
| arulesSequences | Mining Frequent Sequences |
| arulesViz | Visualizing Association Rules and Frequent Itemsets |
| ARUtools | Management and Processing of Autonomous Recording Unit (ARU) Data |
| aRxiv | Interface to the arXiv API |
| asaur | Data Sets for "Applied Survival Analysis Using R"" |
| asbio | A Collection of Statistical Tools for Biologists |
| ascentTraining | Ascent Training Datasets |
| ascii | Export R Objects to Several Markup Languages |
| asciicast | Create 'Ascii' Screen Casts from R Scripts |
| asciichartr | Lightweight ASCII Line Graphs |
| asciiruler | Render an ASCII Ruler |
| asciiSetupReader | Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have Accompanying Setup Files (.sps or .sas) |
| ascotraceR | Simulate the Spread of Ascochyta Blight in Chickpea |
| asd | Simulations for Adaptive Seamless Designs |
| asdreader | Reading ASD Binary Files in R |
| ASGS.foyer | Interface to the Australian Statistical Geography Standard |
| ash | David Scott's ASH Routines |
| ashapesampler | Generating Alpha Shapes |
| ashr | Methods for Adaptive Shrinkage, using Empirical Bayes |
| asht | Applied Statistical Hypothesis Tests |
| AsioHeaders | 'Asio' C++ Header Files |
| askgpt | Asking GPT About R Stuff |
| askpass | Password Entry Utilities for R, Git, and SSH |
| aslib | Interface to the Algorithm Selection Benchmark Library |
| asm | Optimal Convex M-Estimation for Linear Regression via Antitonic Score Matching |
| ASMap | Linkage Map Construction using the MSTmap Algorithm |
| ASMbook | Functions for the Book "Applied Statistical Modeling for Ecologists" |
| asmbPLS | Predicting and Classifying Patient Phenotypes with Multi-Omics Data |
| asnipe | Animal Social Network Inference and Permutations for Ecologists |
| aspace | Functions for Estimating Centrographic Statistics |
| aspect | A General Framework for Multivariate Analysis with Optimal Scaling |
| aspi | Analysis of Symmetry of Parasitic Infections |
| aspline | Spline Regression with Adaptive Knot Selection |
| aSPU | Adaptive Sum of Powered Score Test |
| asremlPlus | Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences |
| ASRgenomics | Complementary Genomic Functions |
| ASSA | Applied Singular Spectrum Analysis (ASSA) |
| assert | Validate Function Arguments |
| assertable | Verbose Assertions for Tabular Data (Data.frames and Data.tables) |
| assertions | Simple Assertions for Beautiful and Customisable Error Messages |
| assertr | Assertive Programming for R Analysis Pipelines |
| assertthat | Easy Pre and Post Assertions |
| assessor | Assessment Tools for Regression Models with Discrete and Semicontinuous Outcomes |
| AssetAllocation | Backtesting Simple Asset Allocation Strategies |
| AssetCorr | Estimating Asset Correlations from Default Data |
| AssetPricing | Optimal Pricing of Assets with Fixed Expiry Date |
| assignPOP | Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework |
| assignR | Infer Geographic Origin from Isotopic Data |
| assist | A Suite of R Functions Implementing Spline Smoothing Techniques |
| ASSISTant | Adaptive Subgroup Selection in Group Sequential Trials |
| AssocAFC | Allele Frequency Comparison |
| AssocBin | Measuring Association with Recursive Binning |
| assocInd | Implements New and Existing Association Indices for Constructing Animal Social Networks |
| AssocTests | Genetic Association Studies |
| assortnet | Calculate the Assortativity Coefficient of Weighted and Binary Networks |
| AST | Age-Spatial-Temporal Model |
| ast2ast | Translates an R Function to a C++ Function |
| aster | Aster Models |
| aster2 | Aster Models |
| asteRisk | Computation of Satellite Position |
| AsthmaNHANES | Asthma Data Sets from NHANES |
| astrochron | A Computational Tool for Astrochronology |
| astrodatR | Astronomical Data |
| astroFns | Astronomy: Time and Position Functions, Misc. Utilities |
| astsa | Applied Statistical Time Series Analysis |
| asus | Adaptive SURE Thresholding Using Side Information |
| ASV | Stochastic Volatility Models with or without Leverage |
| AsyK | Kernel Density Estimation |
| asylum | Data on Asylum and Resettlement for the UK |
| asymLD | Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data |
| AsymmetricSORDs | Asymmetric Second Order Rotatable Designs (AsymmetricSORDs) |
| asymmetry | Multidimensional Scaling of Asymmetric Proximities |
| asymmetry.measures | Asymmetry Measures for Probability Density Functions |
| asympTest | A Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples |
| asymptor | Estimate Asymptomatic Cases via Capture/Recapture Methods |
| AsynchLong | Regression Analysis of Sparse Asynchronous Longitudinal Data |
| ata | Automated Test Assembly |
| atable | Create Tables for Reporting Clinical Trials |
| ATAforecasting | Automatic Time Series Analysis and Forecasting using the Ata Method |
| atakrig | Area-to-Area Kriging |
| ATbounds | Bounding Treatment Effects by Limited Information Pooling |
| ATE.ERROR | Estimating ATE with Misclassified Outcomes and Mismeasured Covariates |
| AteMeVs | Average Treatment Effects with Measurement Error and Variable Selection for Confounders |
| atime | Asymptotic Timing |
| atlas | Stanford 'ATLAS' Search Engine API |
| AtlasMaker | Make Multiple 'leaflet' Maps in 'Shiny' |
| AtmChile | Download Air Quality and Meteorological Information of Chile |
| atmopt | Analysis-of-Marginal-Tail-Means |
| ATNr | Run Allometric Trophic Networks Models |
| atom4R | Tools to Handle and Publish Metadata as 'Atom' XML Format |
| atpolR | ATPOL Grid Implementation |
| ATQ | Alert Time Quality - Evaluating Timely Epidemic Metrics |
| ATR | Alternative Tree Representation |
| atRisk | At-Risk |
| atrrr | Wrapper for the 'AT' Protocol Behind 'Bluesky' |
| aTSA | Alternative Time Series Analysis |
| attachment | Deal with Dependencies |
| attempt | Tools for Defensive Programming |
| attention | Self-Attention Algorithm |
| attenuation | Correcting for Attenuation Due to Measurement Error |
| attrib | Attributable Burden of Disease |
| AUC | Threshold Independent Performance Measures for Probabilistic Classifiers |
| auctestr | Statistical Testing for AUC Data |
| auctionr | Estimate First-Price Auction Model |
| audio | Audio Interface for R |
| audiometry | Standard Conform Pure Tone Audiometry (PTA) Plots |
| audit | Bounds for Accounting Populations |
| auditor | Model Audit - Verification, Validation, and Error Analysis |
| audrex | Automatic Dynamic Regression using Extreme Gradient Boosting |
| audubon | Japanese Text Processing Tools |
| augmentedRCBD | Analysis of Augmented Randomised Complete Block Designs |
| augSIMEX | Analysis of Data with Mixed Measurement Error and Misclassification in Covariates |
| auk | eBird Data Extraction and Processing in R |
| aum | Area Under Minimum of False Positives and Negatives |
| AurieLSHGaussian | Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections |
| auRoc | Various Methods to Estimate the AUC |
| ausplotsR | TERN AusPlots Australian Ecosystem Monitoring Data |
| AustralianPoliticians | Provides Datasets About Australian Politicians |
| AUtests | Approximate Unconditional and Permutation Tests |
| auth0 | Authentication in Shiny with Auth0 |
| auto.pca | Automatic Variable Reduction Using Principal Component Analysis |
| AutoAds | Advertisement Metrics Calculation |
| autoBagging | Learning to Rank Bagging Workflows with Metalearning |
| autocogs | Automatic Cognostic Summaries |
| autoCovariateSelection | Automated Covariate Selection Using HDPS Algorithm |
| AutoDeskR | An Interface to the 'AutoDesk' 'API' Platform |
| autoEnsemble | Automated Stacked Ensemble Classifier for Severe Class Imbalance |
| autoFC | Automatic Construction of Forced-Choice Tests |
| autoFRK | Automatic Fixed Rank Kriging |
| autogam | Automate the Creation of Generalized Additive Models (GAMs) |
| autoGO | Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations |
| autoharp | Semi-Automatic Grading of R and Rmd Scripts |
| autohrf | Automated Generation of Data-Informed GLM Models in Task-Based fMRI Data Analysis |
| autoimage | Multiple Heat Maps for Projected Coordinates |
| autokeras | R Interface to 'AutoKeras' |
| automagic | Automagically Document and Install Packages Necessary to Run R Code |
| automap | Automatic Interpolation Package |
| autoMFA | Algorithms for Automatically Fitting MFA Models |
| automl | Deep Learning with Metaheuristic |
| autoMrP | Improving MrP with Ensemble Learning |
| autonewsmd | Auto-Generate Changelog using Conventional Commits |
| AutoPipe | Automated Transcriptome Classifier Pipeline: Comprehensive Transcriptome Analysis |
| autoplotly | Automatic Generation of Interactive Visualizations for Statistical Results |
| Autoplotprotein | Development of Visualization Tools for Protein Sequence |
| AutoPlots | Creating Echarts Visualizations as Easy as Possible |
| autoRasch | Semi-Automated Rasch Analysis |
| autoReg | Automatic Linear and Logistic Regression and Survival Analysis |
| AutoregressionMDE | Minimum Distance Estimation in Autoregressive Model |
| AutoScore | An Interpretable Machine Learning-Based Automatic Clinical Score Generator |
| autoScorecard | Fully Automatic Generation of Scorecards |
| Autoseed | Retrieve Disease-Related Genes from Public Sources |
| autoshiny | Automatic Transformation of an 'R' Function into a 'shiny' App |
| autostats | Auto Stats |
| AutoStepwiseGLM | Builds Stepwise GLMs via Train and Test Approach |
| autostsm | Automatic Structural Time Series Models |
| autothresholdr | An R Port of the 'ImageJ' Plugin 'Auto Threshold' |
| AutoTransQF | A Novel Automatic Shifted Log Transformation |
| autoTS | Automatic Model Selection and Prediction for Univariate Time Series |
| autovi | Auto Visual Inference with Computer Vision Models |
| AutoWeatherIndices | Calculating Weather Indices |
| av | Working with Audio and Video in R |
| available | Check if the Title of a Package is Available, Appropriate and Interesting |
| avar | Allan Variance |
| averisk | Calculation of Average Population Attributable Fractions and Confidence Intervals |
| avesperu | Access to the List of Birds Species of Peru |
| AVGAS | A Variable Selection using Genetic Algorithms |
| avidaR | A Computational Biologist’s Toolkit To Get Data From 'avidaDB' |
| AvInertia | Calculate the Inertial Properties of a Flying Bird |
| aVirtualTwins | Adaptation of Virtual Twins Method from Jared Foster |
| avocado | Weekly Hass Avocado Sales Summary |
| avotrex | A Global Dataset of Anthropogenic Extinct Birds and their Traits: Phylogeny Builder |
| aweek | Convert Dates to Arbitrary Week Definitions |
| aweSOM | Interactive Self-Organizing Maps |
| awinR | Get Data from 'Awin' via the 'Windsor.ai' API |
| AWR | 'AWS' Java 'SDK' for R |
| AWR.Kinesis | Amazon 'Kinesis' Consumer Application for Stream Processing |
| aws | Adaptive Weights Smoothing |
| aws.alexa | Client for the Amazon Alexa Web Information Services API |
| aws.comprehend | Client for 'AWS Comprehend' |
| aws.ec2metadata | Get EC2 Instance Metadata |
| aws.ecx | Communicating with AWS EC2 and ECS using AWS REST APIs |
| aws.iam | AWS IAM Client Package |
| aws.kms | 'AWS Key Management Service' Client Package |
| aws.lambda | AWS Lambda Client Package |
| aws.polly | Client for AWS Polly |
| aws.s3 | 'AWS S3' Client Package |
| aws.signature | Amazon Web Services Request Signatures |
| aws.transcribe | Client for 'AWS Transcribe' |
| aws.translate | Client for 'AWS Translate' |
| aws.wrfsmn | Data Processing of SMN Hi-Res Weather Forecast from 'AWS' |
| awsMethods | Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi' |
| axisandallies | Axis and Allies Spring |
| AZIAD | Analyzing Zero-Inflated and Zero-Altered Data |
| azlogr | Logging in 'R' and Post to 'Azure Log Analytics' Workspace |
| AzureAppInsights | Include Azure Application Insights in Shiny Apps |
| AzureAuth | Authentication Services for Azure Active Directory |
| AzureCognitive | Interface to Azure Cognitive Services |
| AzureContainers | Interface to 'Container Instances', 'Docker Registry' and 'Kubernetes' in 'Azure' |
| AzureCosmosR | Interface to the 'Azure Cosmos DB' 'NoSQL' Database Service |
| AzureGraph | Simple Interface to 'Microsoft Graph' |
| AzureKeyVault | Key and Secret Management in 'Azure' |
| AzureKusto | Interface to 'Kusto'/'Azure Data Explorer' |
| azuremlsdk | Interface to the 'Azure Machine Learning' 'SDK' |
| AzureQstor | Interface to 'Azure Queue Storage' |
| AzureRMR | Interface to 'Azure Resource Manager' |
| AzureStor | Storage Management in 'Azure' |
| AzureTableStor | Interface to the Table Storage Service in 'Azure' |
| AzureVision | Interface to Azure Computer Vision Services |
| AzureVM | Virtual Machines in 'Azure' |
| AzureVMmetadata | Interface to Azure Virtual Machine Instance Metadata |
| b64 | Fast and Vectorized Base 64 Engine |
| babel | Ribosome Profiling Data Analysis |
| babelgene | Gene Orthologs for Model Organisms in a Tidy Data Format |
| babelmixr2 | Use 'nlmixr2' to Interact with Open Source and Commercial Software |
| babelwhale | Talking to 'Docker' and 'Singularity' Containers |
| babette | Control 'BEAST2' |
| babynames | US Baby Names 1880-2017 |
| babynamesIL | Israel Baby Names 1948-2022 |
| BACCO | Bayesian Analysis of Computer Code Output (BACCO) |
| BACCT | Bayesian Augmented Control for Clinical Trials |
| bacistool | Bayesian Classification and Information Sharing (BaCIS) Tool for the Design of Multi-Group Phase II Clinical Trials |
| backbone | Extracts the Backbone from Graphs |
| backpipe | Backward Pipe (Right-to-Left) Operator |
| backports | Reimplementations of Functions Introduced Since R-3.0.0 |
| backShift | Learning Causal Cyclic Graphs from Unknown Shift Interventions |
| backtest | Exploring Portfolio-Based Conjectures About Financial Instruments |
| baclava | Bayesian Analysis of Cancer Latency with Auxiliary Variable Augmentation |
| bacondecomp | Goodman-Bacon Decomposition |
| BACprior | Choice of Omega in the BAC Algorithm |
| bacr | Bayesian Adjustment for Confounding |
| badgen | Fast and Simple Badge Generator |
| badger | Badge for R Package |
| baf | Block Assignment Files |
| baffle | Make Waffle Plots with Base Graphics |
| bage | Bayesian Estimation and Forecasting of Age-Specific Rates |
| bagged.outliertrees | Robust Explainable Outlier Detection Based on OutlierTree |
| baggingbwsel | Bagging Bandwidth Selection in Kernel Density and Regression Estimation |
| baggr | Bayesian Aggregate Treatment Effects |
| BAGofT | A Binary Regression Adaptive Goodness-of-Fit Test (BAGofT) |
| baguette | Efficient Model Functions for Bagging |
| bagyo | Philippine Tropical Cyclones Data |
| bahc | Filter Covariance and Correlation Matrices with Bootstrapped-Averaged Hierarchical Ansatz |
| bain | Bayes Factors for Informative Hypotheses |
| baizer | Useful Functions for Data Processing |
| bakeoff | Data from "The Great British Bake Off" |
| baker | "Nested Partially Latent Class Models" |
| bakR | Analyze and Compare Nucleotide Recoding RNA Sequencing Datasets |
| BalanceCheck | Balance Check for Multiple Covariates in Matched Observational Studies |
| BalancedSampling | Balanced and Spatially Balanced Sampling |
| baldur | Bayesian Hierarchical Modeling for Label-Free Proteomics |
| Ball | Statistical Inference and Sure Independence Screening via Ball Statistics |
| BALLI | Expression RNA-Seq Data Analysis Based on Linear Mixed Model |
| BallMapper | The Ball Mapper Algorithm |
| BaM | Functions and Datasets for "Bayesian Methods: A Social and Behavioral Sciences Approach" |
| bama | High Dimensional Bayesian Mediation Analysis |
| BAMBI | Bivariate Angular Mixture Models |
| bambooHR | A Wrapper to the 'BambooHR' API |
| bamdit | Bayesian Meta-Analysis of Diagnostic Test Data |
| bamlss | Bayesian Additive Models for Location, Scale, and Shape (and Beyond) |
| bamm | Species Distribution Models as a Function of Biotic, Abiotic and Movement Factors (BAM) |
| BAMMtools | Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |
| bamp | Bayesian Age-Period-Cohort Modeling and Prediction |
| BANAM | Bayesian Analysis of the Network Autocorrelation Model |
| bandicoot | Light-Weight 'python'-Like Object-Oriented System |
| bandit | Functions for Simple a/B Split Test and Multi-Armed Bandit Analysis |
| banditpam | Almost Linear-Time k-Medoids Clustering |
| bandsfdp | Compute Upper Prediction Bounds on the FDP in Competition-Based Setups |
| banffIT | Automatize Diagnosis Standardized Assignation Using the Banff Classification |
| bang | Bayesian Analysis, No Gibbs |
| bangladesh | Provides Ready to Use Shapefiles for Geographical Map of Bangladesh |
| bannerCommenter | Make Banner Comments with a Consistent Format |
| BANOVA | Hierarchical Bayesian ANOVA Models |
| banter | BioAcoustic eveNT classifiER |
| banxicoR | Download Data from the Bank of Mexico |
| baorista | Bayesian Aoristic Analyses |
| bapred | Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data) |
| BAR | Bayesian Adaptive Randomization |
| BarBorGradient | Function Minimum Approximator |
| barcode | Render Barcode Distribution Plots |
| baRcodeR | Label Creation for Tracking and Collecting Data from Biological Samples |
| BarcodingR | Species Identification using DNA Barcodes |
| bardr | Complete Works of William Shakespeare in Tidy Format |
| bark | Bayesian Additive Regression Kernels |
| Barnard | Barnard's Unconditional Test |
| barrks | Calculate Bark Beetle Phenology Using Different Models |
| BART | Bayesian Additive Regression Trees |
| bartCause | Causal Inference using Bayesian Additive Regression Trees |
| bartcs | Bayesian Additive Regression Trees for Confounder Selection |
| bartMachine | Bayesian Additive Regression Trees |
| bartMachineJARs | bartMachine JARs |
| bartMan | Create Visualisations for BART Models |
| baRulho | Quantifying (Animal) Sound Degradation |
| BAS | Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling |
| basad | Bayesian Variable Selection with Shrinking and Diffusing Priors |
| base.rms | Convert Regression Between Base Function and 'rms' Package |
| base64 | Base64 Encoder and Decoder |
| base64enc | Tools for base64 encoding |
| base64url | Fast and URL-Safe Base64 Encoder and Decoder |
| baseballr | Acquiring and Analyzing Baseball Data |
| basecamb | Utilities for Streamlined Data Import, Imputation and Modelling |
| basedosdados | 'Base Dos Dados' R Client |
| basefun | Infrastructure for Computing with Basis Functions |
| baseline | Baseline Correction of Spectra |
| basemaps | Accessing Spatial Basemaps in R |
| basemodels | Baseline Models for Classification and Regression |
| baseq | Basic Sequence Processing Tool for Biological Data |
| BaseSet | Working with Sets the Tidy Way |
| BaseTempSeed | Estimation of Seed Germination Base Temperature in Thermal Modelling |
| basetheme | Themes for Base Graphics Plots |
| basf | Plot Simple Features with 'base' Sensibilities |
| basicdrm | Fit Hill Dose Response Models |
| basicMCMCplots | Trace Plots, Density Plots and Chain Comparisons for MCMC Samples |
| basictabler | Construct Rich Tables for Output to 'HTML'/'Excel' |
| basifoR | Retrieval and Processing of the Spanish National Forest Inventory |
| BASiNET | Classification of RNA Sequences using Complex Network Theory |
| BASiNETEntropy | Classification of RNA Sequences using Complex Network and Information Theory |
| BaSkePro | Bayesian Model to Archaeological Faunal Skeletal Profiles |
| basket | Basket Trial Analysis |
| BasketballAnalyzeR | Analysis and Visualization of Basketball Data |
| baskexact | Analytical Calculation of Basket Trial Operating Characteristics |
| basksim | Simulation-Based Calculation of Basket Trial Operating Characteristics |
| BASS | Bayesian Adaptive Spline Surfaces |
| BaSTA | Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data |
| BAT | Biodiversity Assessment Tools |
| batata | Managing Packages Removal and Installation |
| batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |
| BatchExperiments | Statistical Experiments on Batch Computing Clusters |
| BatchGetSymbols | Downloads and Organizes Financial Data for Multiple Tickers |
| BatchJobs | Batch Computing with R |
| batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |
| batchmix | Semi-Supervised Bayesian Mixture Models Incorporating Batch Correction |
| batchscr | Batch Script Helpers |
| batchtma | Batch Effect Adjustments |
| batchtools | Tools for Computation on Batch Systems |
| bate | Computes Bias-Adjusted Treatment Effect |
| batman | Convert Categorical Representations of Logicals to Actual Logicals |
| batsch | Real-Time PCR Data Sets by Batsch et al. (2008) |
| BATSS | Bayesian Adaptive Trial Simulator Software (BATSS) for Generalised Linear Models |
| batteryreduction | An R Package for Data Reduction by Battery Reduction |
| BAwiR | Analysis of Basketball Data |
| bayclumpr | Bayesian Analysis of Clumped Isotope Datasets |
| baycn | Bayesian Inference for Causal Networks |
| bayefdr | Bayesian Estimation and Optimisation of Expected False Discovery Rate |
| Bayenet | Bayesian Quantile Elastic Net for Genetic Study |
| bayes4psy | User Friendly Bayesian Data Analysis for Psychology |
| bayesAB | Fast Bayesian Methods for AB Testing |
| bayesammi | Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model |
| bayesanova | Bayesian Inference in the Analysis of Variance via Markov Chain Monte Carlo in Gaussian Mixture Models |
| BayesARIMAX | Bayesian Estimation of ARIMAX Model |
| bayesassurance | Bayesian Assurance Computation |
| BayesBEKK | Bayesian Estimation of Bivariate Volatility Model |
| BayesBinMix | Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions |
| bayesbio | Miscellaneous Functions for Bioinformatics and Bayesian Statistics |
| bayesboot | An Implementation of Rubin's (1981) Bayesian Bootstrap |
| BayesBP | Bayesian Estimation using Bernstein Polynomial Fits Rate Matrix |
| BayesCACE | Bayesian Model for CACE Analysis |
| BayesCombo | Bayesian Evidence Combination |
| BayesComm | Bayesian Community Ecology Analysis |
| bayescopulareg | Bayesian Copula Regression |
| bayescount | Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC |
| BayesCR | Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions |
| bayesCT | Simulation and Analysis of Adaptive Bayesian Clinical Trials |
| BayesCTDesign | Two Arm Bayesian Clinical Trial Design with and Without Historical Control Data |
| bayesCureRateModel | Bayesian Cure Rate Modeling for Time-to-Event Data |
| BayesCVI | Bayesian Cluster Validity Index |
| BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |
| bayesDccGarch | Methods and Tools for Bayesian Dynamic Conditional Correlation GARCH(1,1) Model |
| BayesDesign | Bayesian Single-Arm Design with Survival Endpoints |
| bayesdfa | Bayesian Dynamic Factor Analysis (DFA) with 'Stan' |
| BayesDIP | Bayesian Decreasingly Informative Priors for Early Termination Phase II Trials |
| BayesDissolution | Bayesian Models for Dissolution Testing |
| bayesdistreg | Bayesian Distribution Regression |
| BayesDLMfMRI | Statistical Analysis for Task-Based Fmri Data |
| bayesDP | Implementation of the Bayesian Discount Prior Approach for Clinical Trials |
| bayesEO | Bayesian Smoothing of Remote Sensing Image Classification |
| BayesESS | Determining Effective Sample Size |
| BayesFactor | Computation of Bayes Factors for Common Designs |
| BayesFBHborrow | Bayesian Dynamic Borrowing with Flexible Baseline Hazard Function |
| BayesFluxR | Implementation of Bayesian Neural Networks |
| BayesFM | Bayesian Inference for Factor Modeling |
| BayesfMRI | Spatial Bayesian Methods for Task Functional MRI Studies |
| bayesforecast | Bayesian Time Series Modeling with Stan |
| bayesGAM | Fit Multivariate Response Generalized Additive Models using Hamiltonian Monte Carlo |
| bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |
| BayesGmed | Bayesian Causal Mediation Analysis using 'Stan' |
| BayesGOF | Bayesian Modeling via Frequentist Goodness-of-Fit |
| BayesGPfit | Fast Bayesian Gaussian Process Regression Fitting |
| BayesGrowth | Estimate Fish Growth Using MCMC Analysis |
| BayesGWQS | Bayesian Grouped Weighted Quantile Sum Regression |
| bayesian | Bindings for Bayesian TidyModels |
| bayesianETAS | Bayesian Estimation of the ETAS Model for Earthquake Occurrences |
| BayesianFactorZoo | Bayesian Solutions for the Factor Zoo: We Just Ran Two Quadrillion Models |
| Bayesiangammareg | Bayesian Gamma Regression: Joint Mean and Shape Modeling |
| BayesianGLasso | Bayesian Graphical Lasso |
| BayesianLaterality | Predict Brain Asymmetry Based on Handedness and Dichotic Listening |
| BayesianMCPMod | Simulate, Evaluate, and Analyze Dose Finding Trials with Bayesian MCPMod |
| BayesianMediationA | Bayesian Mediation Analysis |
| BayesianNetwork | Bayesian Network Modeling and Analysis |
| BayesianPlatformDesignTimeTrend | Simulate and Analyse Bayesian Platform Trial with Time Trend |
| BayesianPower | Sample Size and Power for Comparing Inequality Constrained Hypotheses |
| BayesianReasoning | Plot Positive and Negative Predictive Values for Medical Tests |
| BayesianTools | General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics |
| Bayesiantreg | Bayesian t Regression for Modeling Mean and Scale Parameters |
| bayesianVARs | MCMC Estimation of Bayesian Vectorautoregressions |
| bayesImageS | Bayesian Methods for Image Segmentation using a Potts Model |
| BayesLCA | Bayesian Latent Class Analysis |
| bayesLife | Bayesian Projection of Life Expectancy |
| bayeslm | Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors |
| BayesLN | Bayesian Inference for Log-Normal Data |
| BayesLogit | PolyaGamma Sampling |
| bayeslongitudinal | Adjust Longitudinal Regression Models Using Bayesian Methodology |
| bayesm | Bayesian Inference for Marketing/Micro-Econometrics |
| BayesMallows | Bayesian Preference Learning with the Mallows Rank Model |
| bayesMeanScale | Bayesian Post-Estimation on the Mean Scale |
| bayesmeta | Bayesian Random-Effects Meta-Analysis and Meta-Regression |
| BayesMFSurv | Bayesian Misclassified-Failure Survival Model |
| bayesMig | Bayesian Projection of Migration |
| bayesmix | Bayesian Mixture Models with JAGS |
| BayesMixSurv | Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |
| bayesmlogit | A Multistate Life Table (MSLT) Methodology Based on Bayesian Approach |
| BayesMortalityPlus | Bayesian Mortality Modelling |
| bayesmove | Non-Parametric Bayesian Analyses of Animal Movement |
| bayesMRM | Bayesian Multivariate Receptor Modeling |
| BayesMultiMode | Bayesian Mode Inference |
| BayesMultMeta | Bayesian Multivariate Meta-Analysis |
| bayesnec | A Bayesian No-Effect- Concentration (NEC) Algorithm |
| BayesNetBP | Bayesian Network Belief Propagation |
| BayesNSGP | Bayesian Analysis of Non-Stationary Gaussian Process Models |
| BayesOrdDesign | Bayesian Group Sequential Design for Ordinal Data |
| BayesPieceHazSelect | Variable Selection in a Hierarchical Bayesian Model for a Hazard Function |
| bayesplay | The Bayes Factor Playground |
| bayesplot | Plotting for Bayesian Models |
| bayespm | Bayesian Statistical Process Monitoring |
| bayesPO | Bayesian Inference for Presence-Only Data |
| bayesPop | Probabilistic Population Projection |
| BayesPostEst | Generate Postestimation Quantities for Bayesian MCMC Estimation |
| BayesPPD | Bayesian Power Prior Design |
| BayesPPDSurv | Bayesian Power Prior Design for Survival Data |
| BayesProject | Fast Projection Direction for Multivariate Changepoint Detection |
| bayesQR | Bayesian Quantile Regression |
| bayesRecon | Probabilistic Reconciliation via Conditioning |
| bayesreg | Bayesian Regression Models with Global-Local Shrinkage Priors |
| Bayesrel | Bayesian Reliability Estimation |
| BayesRep | Bayesian Analysis of Replication Studies |
| BayesRepDesign | Bayesian Design of Replication Studies |
| BayesReversePLLH | Fits the Bayesian Piecewise Linear Log-Hazard Model |
| BayesRGMM | Bayesian Robust Generalized Mixed Models for Longitudinal Data |
| bayesROE | Bayesian Regions of Evidence |
| BayesRS | Bayes Factors for Hierarchical Linear Models with Continuous Predictors |
| bayesrules | Datasets and Supplemental Functions from Bayes Rules! Book |
| bayess | Bayesian Essentials with R |
| BayesS5 | Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5) |
| BayesSampling | Bayes Linear Estimators for Finite Population |
| BayesSenMC | Different Models of Posterior Distributions of Adjusted Odds Ratio |
| BayesSUR | Bayesian Seemingly Unrelated Regression Models in High-Dimensional Settings |
| bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |
| BayesSurvival | Bayesian Survival Analysis for Right Censored Data |
| BayesSurvive | Bayesian Survival Models for High-Dimensional Data |
| bayest | Effect Size Targeted Bayesian Two-Sample t-Tests via Markov Chain Monte Carlo in Gaussian Mixture Models |
| bayestestR | Understand and Describe Bayesian Models and Posterior Distributions |
| bayesTFR | Bayesian Fertility Projection |
| BayesTools | Tools for Bayesian Analyses |
| BayesTree | Bayesian Additive Regression Trees |
| BayesTreePrior | Bayesian Tree Prior Simulation |
| BayesTwin | Bayesian Analysis of Item-Level Twin Data |
| BayesVarSel | Bayes Factors, Model Choice and Variable Selection in Linear Models |
| bayesvl | Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan' |
| bayesWatch | Bayesian Change-Point Detection for Process Monitoring with Fault Detection |
| BayesX | R Utilities Accompanying the Software Package BayesX |
| BayesXsrc | Distribution of the 'BayesX' C++ Sources |
| bayesZIB | Bayesian Zero-Inflated Bernoulli Regression Model |
| bayfoxr | Global Bayesian Foraminifera Core Top Calibration |
| baygel | Bayesian Shrinkage Estimators for Precision Matrices in Gaussian Graphical Models |
| BayLum | Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating |
| bayMDS | Bayesian Multidimensional Scaling and Choice of Dimension |
| baymedr | Computation of Bayes Factors for Common Biomedical Designs |
| baystability | Bayesian Stability Analysis of Genotype by Environment Interaction (GEI) |
| BAYSTAR | On Bayesian Analysis of Threshold Autoregressive Models |
| baytrends | Long Term Water Quality Trend Analysis |
| bazar | Miscellaneous Basic Functions |
| BB | Solving and Optimizing Large-Scale Nonlinear Systems |
| bbdetection | Identification of Bull and Bear States of the Market |
| BBEST | Bayesian Estimation of Incoherent Neutron Scattering Backgrounds |
| BBI | Benthic Biotic Indices Calculation from Composition Data |
| bbk | Client for the Deutsche Bundesbank and European Central Bank APIs |
| bbknnR | Perform Batch Balanced KNN in R |
| bbl | Boltzmann Bayes Learner |
| BBmisc | Miscellaneous Helper Functions for B. Bischl |
| bbmix | Bayesian Model for Genotyping using RNA-Seq |
| bbmle | Tools for General Maximum Likelihood Estimation |
| bbnet | Create Simple Predictive Models on Bayesian Belief Networks |
| bbotk | Black-Box Optimization Toolkit |
| bbreg | Bessel and Beta Regressions via Expectation-Maximization Algorithm for Continuous Bounded Data |
| BBSSL | Bayesian Bootstrap Spike-and-Slab LASSO |
| bbw | Blocked Weighted Bootstrap |
| bc3net | Gene Regulatory Network Inference with Bc3net |
| BCA1SG | Block Coordinate Ascent with One-Step Generalized Rosen Algorithm |
| bcaboot | Bias Corrected Bootstrap Confidence Intervals |
| BCBCSF | Bias-Corrected Bayesian Classification with Selected Features |
| bcc | Beta Control Charts |
| BCC1997 | Calculation of Option Prices Based on a Universal Solution |
| BCClong | Bayesian Consensus Clustering for Multiple Longitudinal Features |
| bccp | Bias Correction under Censoring Plan |
| BCDAG | Bayesian Structure and Causal Learning of Gaussian Directed Graphs |
| bcdata | Search and Retrieve Data from the BC Data Catalogue |
| BCDating | Business Cycle Dating and Plotting Tools |
| BcDiag | Diagnostics Plots for Bicluster Data |
| BCEA | Bayesian Cost Effectiveness Analysis |
| BCEE | The Bayesian Causal Effect Estimation Algorithm |
| bcf | Causal Inference using Bayesian Causal Forests |
| bcfrailph | Semiparametric Bivariate Correlated Frailty Models Fit |
| bcfrailphdv | Bivariate Correlated Frailty Models with Varied Variances |
| bcgam | Bayesian Constrained Generalised Linear Models |
| BCgee | Bias-Corrected Estimates for Generalized Linear Models for Dependent Data |
| BCHM | Clinical Trial Calculation Based on BCHM Design |
| Bchron | Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling |
| BClustLonG | A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data |
| bcmaps | Map Layers and Spatial Utilities for British Columbia |
| bcmixed | Mixed Effect Model with the Box-Cox Transformation |
| bcpa | Behavioral Change Point Analysis of Animal Movement |
| bcputility | Wrapper for SQL Server bcp Utility |
| BCRA | Breast Cancer Risk Assessment |
| bcrm | Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials |
| bcROCsurface | Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests |
| bcrypt | 'Blowfish' Key Derivation and Password Hashing |
| BCSub | A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering) |
| BCT | Bayesian Context Trees for Discrete Time Series |
| bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |
| bda | Binned Data Analysis |
| BDAlgo | Bloom Detecting Algorithm |
| bdc | Biodiversity Data Cleaning |
| bdDwC | Darwinizer: Darwin Core (DwC) Field Names Standardization |
| bde | Bounded Density Estimation |
| BDEsize | Efficient Determination of Sample Size in Balanced Design of Experiments |
| BDgraph | Bayesian Structure Learning in Graphical Models using Birth-Death MCMC |
| bdl | Interface and Tools for 'BDL' API |
| bdlim | Bayesian Distributed Lag Interaction Models |
| bdlp | Transparent and Reproducible Artificial Data Generation |
| bdots | Bootstrapped Differences of Time Series |
| BDP2 | Bayesian Adaptive Designs for Phase II Trials with Binary Endpoint |
| bdpar | Big Data Preprocessing Architecture |
| bdpv | Inference and Design for Predictive Values in Diagnostic Tests |
| bdrc | Bayesian Discharge Rating Curves |
| bdribs | Bayesian Detection of Potential Risk Using Inference on Blinded Safety Data |
| bdscale | Remove Weekends and Holidays from ggplot2 Axes |
| bdsmatrix | Routines for Block Diagonal Symmetric Matrices |
| bdsvd | Block Structure Detection Using Singular Vectors |
| BDWreg | Bayesian Inference for Discrete Weibull Regression |
| BE | Bioequivalence Study Data Analysis |
| bea.R | Bureau of Economic Analysis API |
| BEACH | Biometric Exploratory Analysis Creation House |
| beadplexr | Analysis of Multiplex Cytometric Bead Assays |
| beakr | A Minimalist Web Framework for R |
| BEAMR | Bootstrap Evaluation of Association Matrices |
| beanplot | Visualization via Beanplots (Like Boxplot/Stripchart/Violin Plot) |
| beans | Data on Dried Beans |
| beanz | Bayesian Analysis of Heterogeneous Treatment Effect |
| bearishTrader | Trading Strategies for Bearish Outlook |
| beast | Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series |
| beastier | Call 'BEAST2' |
| BeastJar | JAR Dependency for MCMC Using 'BEAST' |
| beastt | Bayesian Evaluation, Analysis, and Simulation Software Tools for Trials |
| beautier | 'BEAUti' from R |
| beaver | Bayesian Model Averaging of Covariate Adjusted Negative-Binomial Dose-Response |
| BED | Biological Entity Dictionary (BED) |
| BEDASSLE | Quantifies Effects of Geo/Eco Distance on Genetic Differentiation |
| BEDMatrix | Extract Genotypes from a PLINK .bed File |
| bedr | Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix' |
| BeeBDC | Occurrence Data Cleaning |
| beeca | Binary Endpoint Estimation with Covariate Adjustment |
| BeeGUTS | General Unified Threshold Model of Survival for Bees using Bayesian Inference |
| beepr | Easily Play Notification Sounds on any Platform |
| beeswarm | The Bee Swarm Plot, an Alternative to Stripchart |
| beezdemand | Behavioral Economic Easy Demand |
| beezdiscounting | Behavioral Economic Easy Discounting |
| befproj | Makes a Local Population Projection |
| behaviorchange | Tools for Behavior Change Researchers and Professionals |
| behavr | Canonical Data Structure for Behavioural Data |
| BEKKs | Multivariate Conditional Volatility Modelling and Forecasting |
| belex | Download Historical Data from the Belgrade Stock Exchange |
| belg | Boltzmann Entropy of a Landscape Gradient |
| BElikelihood | Likelihood Method for Evaluating Bioequivalence |
| bellreg | Count Regression Models Based on the Bell Distribution |
| bench | High Precision Timing of R Expressions |
| benchden | 28 Benchmark Densities from Berlinet/Devroye (1994) |
| Benchmarking | Benchmark and Frontier Analysis Using DEA and SFA |
| benchmarkme | Crowd Sourced System Benchmarks |
| benchmarkmeData | Data Set for the 'benchmarkme' Package |
| benchr | High Precise Measurement of R Expressions Execution Time |
| BEND | Bayesian Estimation of Nonlinear Data (BEND) |
| bender | Bender Client |
| benford | Benford's Analysis on Large Data Sets |
| benford.analysis | Benford Analysis for Data Validation and Forensic Analytics |
| BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |
| BENMMI | Benthic Multi-Metric Index |
| bennu | Bayesian Estimation of Naloxone Kit Number Under-Reporting |
| bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |
| benthos | Marine Benthic Ecosystem Analysis |
| BeQut | Bayesian Estimation for Quantile Regression Mixed Models |
| Bergm | Bayesian Exponential Random Graph Models |
| Bernadette | Bayesian Inference and Model Selection for Stochastic Epidemics |
| berryFunctions | Function Collection Related to Plotting and Hydrology |
| bespatial | Boltzmann Entropy for Spatial Data |
| BeSS | Best Subset Selection in Linear, Logistic and CoxPH Models |
| Bessel | Computations and Approximations for Bessel Functions |
| bestglm | Best Subset GLM and Regression Utilities |
| besthr | Generating Bootstrap Estimation Distributions of HR Data |
| Bestie | Bayesian Estimation of Intervention Effects |
| bestNormalize | Normalizing Transformation Functions |
| BESTree | Branch-Exclusive Splits Trees |
| bestridge | A Comprehensive R Package for Best Subset Selection |
| bestSDP | Burden Estimate of Common Communicable Diseases in Settlements of Displaced Populations |
| BET | Binary Expansion Testing |
| betaBayes | Bayesian Beta Regression |
| BetaBit | Mini Games from Adventures of Beta and Bit |
| betacal | Beta Calibration |
| betaclust | A Family of Beta Mixture Models for Clustering Beta-Valued DNA Methylation Data |
| betaDelta | Confidence Intervals for Standardized Regression Coefficients |
| betafunctions | Functions for Working with Two- And Four-Parameter Beta Probability Distributions and Psychometric Analysis of Classifications |
| betaMC | Monte Carlo for Regression Effect Sizes |
| betaNB | Bootstrap for Regression Effect Sizes |
| betapart | Partitioning Beta Diversity into Turnover and Nestedness Components |
| BetaPASS | Calculate Power and Sample Size with Beta Regression |
| betaper | Taxonomic Uncertainty on Multivariate Analyses of Ecological Data |
| betareg | Beta Regression |
| betaSandwich | Robust Confidence Intervals for Standardized Regression Coefficients |
| betategarch | Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models |
| bethel | Bethel's algorithm |
| BETS | Brazilian Economic Time Series |
| bets.covid19 | The BETS Model for Early Epidemic Data |
| BetterReg | Better Statistics for OLS and Binomial Logistic Regression |
| BeviMed | Bayesian Evaluation of Variant Involvement in Mendelian Disease |
| bexy | Visualize and Parse the Output of 'BeXY' |
| BeyondBenford | Compare the Goodness of Fit of Benford's and Blondeau Da Silva's Digit Distributions to a Given Dataset |
| beyondWhittle | Bayesian Spectral Inference for Time Series |
| bezier | Toolkit for Bezier Curves and Splines |
| bfast | Breaks for Additive Season and Trend |
| BFF | Bayes Factor Functions |
| BFI | Bayesian Federated Inference |
| bfp | Bayesian Fractional Polynomials |
| BFpack | Flexible Bayes Factor Testing of Scientific Expectations |
| BFS | Get Data from the Swiss Federal Statistical Office |
| bfsl | Best-Fit Straight Line |
| bfsMaps | Plot Maps from Switzerland by Swiss Federal Statistical Office |
| bfw | Bayesian Framework for Computational Modeling |
| BGData | A Suite of Packages for Analysis of Big Genomic Data |
| bgev | Bimodal GEV Distribution with Location Parameter |
| bgeva | Binary Generalized Extreme Value Additive Models |
| BGFD | Bell-G and Complementary Bell-G Family of Distributions |
| BGGE | Bayesian Genomic Linear Models Applied to GE Genome Selection |
| BGGM | Bayesian Gaussian Graphical Models |
| bggum | Bayesian Estimation of Generalized Graded Unfolding Model Parameters |
| BGLR | Bayesian Generalized Linear Regression |
| bgmfiles | Example BGM Files for the Atlantis Ecosystem Model |
| BGmisc | An R Package for Extended Behavior Genetics Analysis |
| bgmm | Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling |
| bgms | Bayesian Analysis of Networks of Binary and/or Ordinal Variables |
| BGPhazard | Markov Beta and Gamma Processes for Modeling Hazard Rates |
| bgsmtr | Bayesian Group Sparse Multi-Task Regression |
| bgumbel | Bimodal Gumbel Distribution |
| BGVAR | Bayesian Global Vector Autoregressions |
| bgw | Bunch-Gay-Welsch Statistical Estimation |
| BH | Boost C++ Header Files |
| BHAI | Estimate the Burden of Healthcare-Associated Infections |
| Bhat | General Likelihood Exploration |
| BHH2 | Useful Functions for Box, Hunter and Hunter II |
| bhm | Biomarker Threshold Models |
| bhmbasket | Bayesian Hierarchical Models for Basket Trials |
| BHMSMAfMRI | Bayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI (fMRI) Data |
| BHSBVAR | Structural Bayesian Vector Autoregression Models |
| BI | Blinding Assessment Indexes for Randomized, Controlled, Clinical Trials |
| BiasCorrector | A GUI to Correct Measurement Bias in DNA Methylation Analyses |
| BiasedUrn | Biased Urn Model Distributions |
| bib2df | Parse a BibTeX File to a Data Frame |
| BiBitR | R Wrapper for Java Implementation of BiBit |
| biblio | Interacting with BibTeX Databases |
| bibliometrix | Comprehensive Science Mapping Analysis |
| bibliometrixData | Bibliometrix Example Datasets |
| biblionetwork | Create Different Types of Bibliometric Networks |
| bibliorefer | Generator of Main Scientific References |
| biblioverlap | Document-Level Matching Between Bibliographic Datasets |
| BibPlots | Plot Functions for Use in Bibliometrics |
| bibs | Bayesian Inference for the Birnbaum-Saunders Distribution |
| bibtex | Bibtex Parser |
| BiCausality | Binary Causality Inference Framework |
| biClassify | Binary Classification Using Extensions of Discriminant Analysis |
| biclust | BiCluster Algorithms |
| biclustermd | Biclustering with Missing Data |
| BICORN | Integrative Inference of De Novo Cis-Regulatory Modules |
| BiDAG | Bayesian Inference for Directed Acyclic Graphs |
| bidask | Efficient Estimation of Bid-Ask Spreads from Open, High, Low, and Close Prices |
| BiDimRegression | Calculates the Bidimensional Regression Between Two 2D Configurations |
| BIEN | Tools for Accessing the Botanical Information and Ecology Network Database |
| BifactorIndicesCalculator | Bifactor Indices Calculator |
| bife | Binary Choice Models with Fixed Effects |
| BIFIEsurvey | Tools for Survey Statistics in Educational Assessment |
| bifurcatingr | Bifurcating Autoregressive Models |
| bigalgebra | 'BLAS' and 'LAPACK' Routines for Native R Matrices and 'big.matrix' Objects |
| biganalytics | Utilities for 'big.matrix' Objects from Package 'bigmemory' |
| bigassertr | Assertion and Message Functions |
| bigBits | Perform Boolean Operations on Large Numbers |
| bigchess | Read, Write, Manipulate, Explore Chess PGN Files and R API to UCI Chess Engines |
| bigD | Flexibly Format Dates and Times to a Given Locale |
| bigdatadist | Distances for Machine Learning and Statistics in the Context of Big Data |
| BIGDAWG | Case-Control Analysis of Multi-Allelic Loci |
| bigDM | Scalable Bayesian Disease Mapping Models for High-Dimensional Data |
| bigergm | Fit, Simulate, and Diagnose Hierarchical Exponential-Family Models for Big Networks |
| bigGP | Distributed Gaussian Process Calculations |
| BIGL | Biochemically Intuitive Generalized Loewe Model |
| biglasso | Extending Lasso Model Fitting to Big Data |
| bigleaf | Physical and Physiological Ecosystem Properties from Eddy Covariance Data |
| biglm | Bounded Memory Linear and Generalized Linear Models |
| bigMap | Big Data Mapping |
| bigmatch | Making Optimal Matching Size-Scalable Using Optimal Calipers |
| bigmds | Multidimensional Scaling for Big Data |
| bigmemory | Manage Massive Matrices with Shared Memory and Memory-Mapped Files |
| bigmemory.sri | A Shared Resource Interface for Bigmemory Project Packages |
| bignum | Arbitrary-Precision Integer and Floating-Point Mathematics |
| bigparallelr | Easy Parallel Tools |
| bigQF | Quadratic Forms in Large Matrices |
| BigQuic | Big Quadratic Inverse Covariance Estimation |
| bigreadr | Read Large Text Files |
| bigReg | Generalized Linear Models (GLM) for Large Data Sets |
| bigrquery | An Interface to Google's 'BigQuery' 'API' |
| bigrquerystorage | An Interface to Google's 'BigQuery Storage' API |
| bigsimr | Fast Generation of High-Dimensional Random Vectors |
| bigsnpr | Analysis of Massive SNP Arrays |
| bigsparser | Sparse Matrix Format with Data on Disk |
| bigsplines | Smoothing Splines for Large Samples |
| bigstatsr | Statistical Tools for Filebacked Big Matrices |
| bigstep | Stepwise Selection for Large Data Sets |
| bigSurvSGD | Big Survival Analysis Using Stochastic Gradient Descent |
| bigtabulate | Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects |
| bigtcr | Nonparametric Analysis of Bivariate Gap Time with Competing Risks |
| bigtime | Sparse Estimation of Large Time Series Models |
| bigutilsr | Utility Functions for Large-scale Data |
| BigVAR | Dimension Reduction Methods for Multivariate Time Series |
| bikeshare14 | Bay Area Bike Share Trips in 2014 |
| bikm1 | Co-Clustering Adjusted Rand Index and Bikm1 Procedure for Contingency and Binary Data-Sets |
| bild | A Package for BInary Longitudinal Data |
| billboard | Contains Data of Billboard Hot 100 Songs |
| billboarder | Create Interactive Chart with the JavaScript 'Billboard' Library |
| bimets | Time Series and Econometric Modeling |
| BimodalIndex | The Bimodality Index |
| binancer | API Client to 'Binance' |
| Binarize | Binarization of One-Dimensional Data |
| BinarybalancedCut | Threshold Cut Point of Probability for a Binary Classifier Model |
| BinaryDosage | Creates, Merges, and Reads Binary Dosage Files |
| BinaryEMVS | Variable Selection for Binary Data Using the EM Algorithm |
| BinaryEPPM | Mean and Scale-Factor Modeling of Under- And Over-Dispersed Binary Data |
| binaryGP | Fit and Predict a Gaussian Process Model with (Time-Series) Binary Response |
| binaryMM | Flexible Marginalized Models for Binary Correlated Outcomes |
| binb | 'binb' is not 'Beamer' |
| BINCOR | Estimate the Correlation Between Two Irregular Time Series |
| binda | Multi-Class Discriminant Analysis using Binary Predictors |
| bindata | Generation of Artificial Binary Data |
| bindr | Parametrized Active Bindings |
| bindrcpp | An 'Rcpp' Interface to Active Bindings |
| binequality | Methods for Analyzing Binned Income Data |
| binford | Binford's Hunter-Gatherer Data |
| binfunest | Estimates Parameters of Functions Driving Binomial Random Variables |
| bingadsR | Get Bing Ads Data via the 'Windsor.ai' API |
| bingat | Binary Graph Analysis Tools |
| binGroup | Evaluation and Experimental Design for Binomial Group Testing |
| binGroup2 | Identification and Estimation using Group Testing |
| BinGSD | Calculate Boundaries and Conditional Power for Single Arm Group Sequential Test with Binary Endpoint |
| binhf | Haar-Fisz Functions for Binomial Data |
| binman | A Binary Download Manager |
| BinMat | Processes Binary Data Obtained from Fragment Analysis (Such as AFLPs, ISSRs, and RFLPs) |
| binMto | Many-to-One Comparisons of Proportions |
| BinNonNor | Data Generation with Binary and Continuous Non-Normal Components |
| BinNor | Simultaneous Generation of Multivariate Binary and Normal Variates |
| binom | Binomial Confidence Intervals for Several Parameterizations |
| binomCI | Confidence Intervals for a Binomial Proportion |
| binomialRF | Binomial Random Forest Feature Selection |
| binomialtrend | Calculates the Statistical Significance of a Trend in a Set of Measurements |
| BinOrdNonNor | Concurrent Generation of Binary, Ordinal and Continuous Data |
| binovisualfields | Depth-Dependent Binocular Visual Fields Simulation |
| binpackr | Fast 1d Bin Packing |
| binr | Cut Numeric Values into Evenly Distributed Groups |
| BinSegBstrap | Piecewise Smooth Regression by Bootstrapped Binary Segmentation |
| binsegRcpp | Efficient Implementation of Binary Segmentation |
| binseqtest | Exact Binary Sequential Designs and Analysis |
| binsmooth | Generate PDFs and CDFs from Binned Data |
| binspp | Bayesian Inference for Neyman-Scott Point Processes |
| binsreg | Binscatter Estimation and Inference |
| binst | Data Preprocessing, Binning for Classification and Regression |
| BINtools | Bayesian BIN (Bias, Information, Noise) Model of Forecasting |
| bio.infer | Predict Environmental Conditions from Biological Observations |
| bio3d | Biological Structure Analysis |
| bioacoustics | Analyse Audio Recordings and Automatically Extract Animal Vocalizations |
| BiObjClass | Classification of Algorithms |
| biobricks | Access Data Dependencies Installed Through 'Biobricks.ai' |
| bioC.logs | BioConductor Package Downloads Stats |
| BioCircos | Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js' |
| bioclim | Bioclimatic Analysis and Classification |
| BiocManager | Access the Bioconductor Project Package Repository |
| biocompute | Create and Manipulate BioCompute Objects |
| BioCro | Modular Crop Growth Simulations |
| Biodem | Biodemography Functions |
| BiodiversityR | Package for Community Ecology and Suitability Analysis |
| biodosetools | An R Shiny Application for Biological Dosimetry |
| BIOdry | Multilevel Modeling of Dendroclimatical Fluctuations |
| biogas | Process Biogas Data and Predict Biogas Production |
| biogeom | Biological Geometries |
| biogram | N-Gram Analysis of Biological Sequences |
| biogrowth | Modelling of Population Growth |
| Bioi | Biological Image Analysis |
| bioimagetools | Tools for Microscopy Imaging |
| bioinactivation | Mathematical Modelling of (Dynamic) Microbial Inactivation |
| BioInsight | Filter and Plot RNA Biotypes |
| biolink | Create Hyperlinks to Biological Databases and Resources |
| biologicalActivityIndices | Biological Activity Indices |
| BioM2 | Biologically Explainable Machine Learning Framework |
| BioMark | Find Biomarkers in Two-Class Discrimination Problems |
| biomartr | Genomic Data Retrieval |
| BIOMASS | Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests |
| biometryassist | Functions to Assist Design and Analysis of Agronomic Experiments |
| biomod2 | Ensemble Platform for Species Distribution Modeling |
| bionetdata | Biological and Chemical Data Networks |
| BioPET | Biomarker Prognostic Enrichment Tool |
| BioPETsurv | Biomarker Prognostic Enrichment Tool for Time-to-Event Trial |
| biopixR | Extracting Insights from Biological Images |
| BioPred | An R Package for Biomarkers Analysis in Precision Medicine |
| BioProbability | Probability in Biostatistics |
| bioRad | Biological Analysis and Visualization of Weather Radar Data |
| bioregion | Comparison of Bioregionalisation Methods |
| BioRssay | Analyze Bioassays and Probit Graphs |
| bios2mds | From Biological Sequences to Multidimensional Scaling |
| biosampleR | Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation |
| biosensors.usc | Distributional Data Analysis Techniques for Biosensor Data |
| bioseq | A Toolbox for Manipulating Biological Sequences |
| biosignalEMG | Tools for Electromyogram Signals (EMG) Analysis |
| bioSNR | Bioacoustic Basic Operations with Decibels and the Passive Sonar Equation |
| biospear | Biomarker Selection in Penalized Regression Models |
| biostat3 | Utility Functions, Datasets and Extended Examples for Survival Analysis |
| Biostatistics | Statistics Tutorials for Biologists |
| BioStatR | Initiation à La Statistique Avec R |
| biostats101 | Practical Functions for Biostatistics Beginners |
| BiostatsUHNplus | Nested Data Summary, Adverse Events and REDCap |
| biotic | Calculation of Freshwater Biotic Indices |
| BioTIMEr | Tools to Use and Explore the 'BioTIME' Database |
| biotools | Tools for Biometry and Applied Statistics in Agricultural Science |
| BioVenn | Create Area-Proportional Venn Diagrams from Biological Lists |
| bipartite | Visualising Bipartite Networks and Calculating Some (Ecological) Indices |
| bipartiteD3 | Interactive Bipartite Graphs |
| BipartiteModularityMaximization | Partition Bipartite Network into Non-Overlapping Biclusters by Optimizing Bipartite Modularity |
| bipd | Bayesian Individual Patient Data Meta-Analysis using 'JAGS' |
| bipl5 | Construct Reactive Calibrated Axes Biplots |
| biplotbootGUI | Bootstrap on Classical Biplots and Clustering Disjoint Biplot |
| biplotEZ | EZ-to-Use Biplots |
| BiplotGUI | Interactive Biplots in R |
| birankr | Ranking Nodes in Bipartite and Weighted Networks |
| birdie | Bayesian Instrumental Regression for Disparity Estimation |
| birdring | Methods to Analyse Ring Re-Encounter Data |
| birdscanR | Migration Traffic Rate Calculation Package for 'Birdscan MR1' Radars |
| birk | MA Birk's Functions |
| birtr | The R Package for "The Basics of Item Response Theory Using R" |
| biscale | Tools and Palettes for Bivariate Thematic Mapping |
| BISdata | Download Data from the Bank for International Settlements (BIS) |
| bisectr | Tools to find bad commits with git bisect |
| BiSEp | Toolkit to Identify Candidate Synthetic Lethality |
| bispdep | Statistical Tools for Bivariate Spatial Dependence Analysis |
| bisque | Approximate Bayesian Inference via Sparse Grid Quadrature Evaluation (BISQuE) for Hierarchical Models |
| BisqueRNA | Decomposition of Bulk Expression with Single-Cell Sequencing |
| BisRNA | Analysis of RNA Cytosine-5 Methylation |
| bistablehistory | Cumulative History Analysis for Bistable Perception Time Series |
| bit | Classes and Methods for Fast Memory-Efficient Boolean Selections |
| bit64 | A S3 Class for Vectors of 64bit Integers |
| bitmexr | R Client for BitMEX |
| bitops | Bitwise Operations |
| BiTrinA | Binarization and Trinarization of One-Dimensional Data |
| bittermelon | Bitmap Tools |
| Bivariate.Pareto | Bivariate Pareto Models |
| bivariatemaps | Creates Bivariate Maps |
| BivGeo | Basu-Dhar Bivariate Geometric Distribution |
| bivgeom | Roy's Bivariate Geometric Distribution |
| bivpois | Bivariate Poisson Distribution |
| BivRec | Bivariate Alternating Recurrent Event Data Analysis |
| BivRegBLS | Tolerance Interval and EIV Regression - Method Comparison Studies |
| bivrp | Bivariate Residual Plots with Simulation Polygons |
| BivUnifBin | Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data |
| biwavelet | Conduct Univariate and Bivariate Wavelet Analyses |
| biwt | Compute the Biweight Mean Vector and Covariance & Correlation Matrice |
| bizdays | Business Days Calculations and Utilities |
| bizicount | Bivariate Zero-Inflated Count Models Using Copulas |
| bkmr | Bayesian Kernel Machine Regression |
| bkmrhat | Parallel Chain Tools for Bayesian Kernel Machine Regression |
| BKTR | Bayesian Kernelized Tensor Regression |
| BLA | Boundary Line Analysis |
| blackbox | Black Box Optimization and Exploration of Parameter Space |
| blackmarbler | Black Marble Data and Statistics |
| blaise | Read and Write FWF Files in the 'Blaise' Format |
| BlakerCI | Blaker's Binomial and Poisson Confidence Limits |
| BlandAltmanLeh | Plots (Slightly Extended) Bland-Altman Plots |
| blandr | Bland-Altman Method Comparison |
| blapsr | Bayesian Inference with Laplace Approximations and P-Splines |
| blaster | Native R Implementation of an Efficient BLAST-Like Algorithm |
| blastula | Easily Send HTML Email Messages |
| blatent | Bayesian Latent Variable Models |
| blatr | Send Emails Using 'Blat' for Windows |
| blavaan | Bayesian Latent Variable Analysis |
| BLCOP | Black-Litterman and Copula Opinion Pooling Frameworks |
| blender | Analyze biotic homogenization of landscapes |
| Blendstat | Joint Analysis of Experiments with Mixtures and Random Effects |
| blindrecalc | Blinded Sample Size Recalculation |
| blindreview | Enables Blind Review of Database |
| blink | Record Linkage for Empirically Motivated Priors |
| bliss | Bayesian Functional Linear Regression with Sparse Step Functions |
| blm | Binomial Linear Regression |
| blme | Bayesian Linear Mixed-Effects Models |
| blmeco | Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" |
| BLModel | Black-Litterman Posterior Distribution |
| blob | A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') |
| blockcluster | Co-Clustering Package for Binary, Categorical, Contingency and Continuous Data-Sets |
| BlockCov | Estimation of Large Block Covariance Matrices |
| blockCV | Spatial and Environmental Blocking for K-Fold and LOO Cross-Validation |
| blockForest | Block Forests: Random Forests for Blocks of Clinical and Omics Covariate Data |
| blocklength | Select an Optimal Block-Length to Bootstrap Dependent Data (Block Bootstrap) |
| blockmatrix | blockmatrix: Tools to solve algebraic systems with partitioned matrices |
| BlockMissingData | Integrating Multi-Source Block-Wise Missing Data in Model Selection |
| blockmodeling | Generalized and Classical Blockmodeling of Valued Networks |
| BlockmodelingGUI | GUI for the Generalised Blockmodeling of Valued Networks |
| blockmodels | Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm |
| blockrand | Randomization for Block Random Clinical Trials |
| blocksdesign | Nested and Crossed Block Designs for Factorial and Unstructured Treatment Sets |
| blockTools | Block, Assign, and Diagnose Potential Interference in Randomized Experiments |
| blocs | Estimate and Visualize Voting Blocs' Partisan Contributions |
| blogdown | Create Blogs and Websites with R Markdown |
| BLOQ | Impute and Analyze Data with BLOQ Observations |
| blorr | Tools for Developing Binary Logistic Regression Models |
| BLPestimatoR | Performs a BLP Demand Estimation |
| BLR | Bayesian Linear Regression |
| blrm | Dose Escalation Design in Phase I Oncology Trial Using Bayesian Logistic Regression Modeling |
| BLRPM | Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse Model |
| BLRShiny | Interactive Document for Working with Binary Logistic Regression Analysis |
| BLRShiny2 | Interactive Document for Working with Binary Logistic Regression Analysis |
| blsBandit | Data Viewer for Bureau of Labor Statistics Data |
| blscrapeR | An API Wrapper for the United States Bureau of Labor Statistics |
| BLSM | Bayesian Latent Space Model |
| blsR | Make Requests from the Bureau of Labor Statistics API |
| bltm | Bayesian Latent Threshold Modeling |
| bluebike | Blue Bike Comprehensive Data |
| BlythStillCasellaCI | Blyth-Still-Casella Exact Binomial Confidence Intervals |
| BMA | Bayesian Model Averaging |
| bmabasket | Bayesian Model Averaging for Basket Trials |
| BMAmevt | Multivariate Extremes: Bayesian Estimation of the Spectral Measure |
| bmass | Bayesian Multivariate Analysis of Summary Statistics |
| BMconcor | CONCOR for Structural- And Regular-Equivalence Blockmodeling |
| bmem | Mediation Analysis with Missing Data Using Bootstrap |
| bmemLavaan | Mediation Analysis with Missing Data and Non-Normal Data |
| bmet | Bayesian Multigroup Equivalence Testing |
| bmgarch | Bayesian Multivariate GARCH Models |
| bmggum | Bayesian Multidimensional Generalized Graded Unfolding Model |
| BMisc | Miscellaneous Functions for Panel Data, Quantiles, and Printing Results |
| bmixture | Bayesian Estimation for Finite Mixture of Distributions |
| bmlm | Bayesian Multilevel Mediation |
| bmm | Easy and Accessible Bayesian Measurement Models Using 'brms' |
| bmp | Read Windows Bitmap (BMP) Images |
| BMRBr | 'BMRB' File Downloader |
| BMRMM | An Implementation of the Bayesian Markov (Renewal) Mixed Models |
| BMS | Bayesian Model Averaging Library |
| bmscstan | Bayesian Multilevel Single Case Models using 'Stan' |
| bmstdr | Bayesian Modeling of Spatio-Temporal Data with R |
| BMT | The BMT Distribution |
| BMTAR | Bayesian Approach for MTAR Models with Missing Data |
| bnclassify | Learning Discrete Bayesian Network Classifiers from Data |
| bndesr | Access Data from the Brazilian Development Bank (BNDES) |
| bndovb | Bounding Omitted Variable Bias Using Auxiliary Data |
| bnlearn | Bayesian Network Structure Learning, Parameter Learning and Inference |
| bnma | Bayesian Network Meta-Analysis using 'JAGS' |
| bnmonitor | An Implementation of Sensitivity Analysis in Bayesian Networks |
| bnnSurvival | Bagged k-Nearest Neighbors Survival Prediction |
| bnpa | Bayesian Networks & Path Analysis |
| BNPdensity | Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures |
| BNPmix | Bayesian Nonparametric Mixture Models |
| bnpsd | Simulate Genotypes from the BN-PSD Admixture Model |
| BNPTSclust | A Bayesian Nonparametric Algorithm for Time Series Clustering |
| bnRep | A Repository of Bayesian Networks from the Academic Literature |
| BNrich | Pathway Enrichment Analysis Based on Bayesian Network |
| BNSL | Bayesian Network Structure Learning |
| BNSP | Bayesian Non- And Semi-Parametric Model Fitting |
| bnstruct | Bayesian Network Structure Learning from Data with Missing Values |
| bnviewer | Bayesian Networks Interactive Visualization and Explainable Artificial Intelligence |
| boa | Bayesian Output Analysis Program (BOA) for MCMC |
| BoardGames | Board Games and Tools for Building Board Games |
| bodenmiller | Profiling of Peripheral Blood Mononuclear Cells using CyTOF |
| Bodi | Boosting Diversity in Regression Ensembles |
| bodsr | Call the Bus Open Data Service ('BODS') API Through R |
| bodycomp | Percent Body Fat Values Using Anthropometric Prediction Equations |
| bodycompref | Reference Values for CT-Assessed Body Composition |
| boggy | Real-Time PCR Data Sets by Boggy et al. (2010) |
| boilerpipeR | Interface to the Boilerpipe Java Library |
| BOIN | Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials |
| boinet | Conduct Simulation Study of Bayesian Optimal Interval Design with BOIN-ET Family |
| boiwsa | Seasonal Adjustment of Weekly Data |
| BOJ | Interface to Bank of Japan Statistics |
| bolasso | Model Consistent Lasso Estimation Through the Bootstrap |
| bolsec | Bolivian Securities |
| Bolstad | Functions for Elementary Bayesian Inference |
| Bolstad2 | Bolstad Functions |
| BoltzMM | Boltzmann Machines with MM Algorithms |
| bondAnalyst | Methods for Fixed-Income Valuation, Risk and Return |
| BondValuation | Fixed Coupon Bond Valuation Allowing for Odd Coupon Periods and Various Day Count Conventions |
| BoneProfileR | Tools to Study Bone Compactness |
| BonEV | An Improved Multiple Testing Procedure for Controlling False Discovery Rates |
| bonn | Access INKAR Database |
| bonsai | Model Wrappers for Tree-Based Models |
| bonsaiforest | Shrinkage Based Forest Plots |
| boodist | Some Distributions from the 'Boost' Library and More |
| bookdown | Authoring Books and Technical Documents with R Markdown |
| BoolFilter | Optimal Estimation of Partially Observed Boolean Dynamical Systems |
| BoolNet | Construction, Simulation and Analysis of Boolean Networks |
| Boom | Bayesian Object Oriented Modeling |
| boomer | Debugging Tools to Inspect the Intermediate Steps of a Call |
| BoomSpikeSlab | MCMC for Spike and Slab Regression |
| boostingDEA | A Boosting Approach to Data Envelopment Analysis |
| BoostMLR | Boosting for Multivariate Longitudinal Responses |
| boostmtree | Boosted Multivariate Trees for Longitudinal Data |
| boostrq | Boosting Regression Quantiles |
| boot | Bootstrap Functions (Originally by Angelo Canty for S) |
| boot.heterogeneity | A Bootstrap-Based Heterogeneity Test for Meta-Analysis |
| boot.pval | Bootstrap p-Values |
| bootcluster | Bootstrapping Estimates of Clustering Stability |
| bootComb | Combine Parameter Estimates via Parametric Bootstrap |
| bootCT | Bootstrapping the ARDL Tests for Cointegration |
| bootES | Bootstrap Confidence Intervals on Effect Sizes |
| bootf2 | Simulation and Comparison of Dissolution Profiles |
| bootGOF | Bootstrap Based Goodness-of-Fit Tests |
| bootImpute | Bootstrap Inference for Multiple Imputation |
| bootLR | Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests |
| BootMRMR | Bootstrap-MRMR Technique for Informative Gene Selection |
| bootnet | Bootstrap Methods for Various Network Estimation Routines |
| bootPLS | Bootstrap Hyperparameter Selection for PLS Models and Extensions |
| BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |
| bootruin | A Bootstrap Test for the Probability of Ruin in the Classical Risk Process |
| bootStepAIC | Bootstrap stepAIC |
| bootstrap | Functions for the Book "An Introduction to the Bootstrap" |
| bootstrapFP | Bootstrap Algorithms for Finite Population Inference |
| BootstrapQTL | Bootstrap cis-QTL Method that Corrects for the Winner's Curse |
| bootsurv | Bootstrap Methods for Complete Survey Data |
| bootSVD | Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |
| bootUR | Bootstrap Unit Root Tests |
| bootwar | Nonparametric Bootstrap Test with Pooled Resampling Card Game |
| BootWPTOS | Test Stationarity using Bootstrap Wavelet Packet Tests |
| Boptbd | Bayesian Optimal Block Designs |
| bor | Transforming Behavioral Observation Records into Data Matrices |
| boral | Bayesian Ordination and Regression AnaLysis |
| borrowr | Estimate Causal Effects with Borrowing Between Data Sources |
| Boruta | Wrapper Algorithm for All Relevant Feature Selection |
| BosonSampling | Classical Boson Sampling |
| BoSSA | A Bunch of Structure and Sequence Analysis |
| bossR | Biomarker Optimal Segmentation System |
| BOSSreg | Best Orthogonalized Subset Selection (BOSS) |
| botor | 'AWS Python SDK' ('boto3') for R |
| BoundaryStats | Boundary Overlap Statistics |
| BoundEdgeworth | Bound on the Error of the First-Order Edgeworth Expansion |
| boundingbox | Create a Bounding Box in an Image |
| boussinesq | Analytic Solutions for (Ground-Water) Boussinesq Equation |
| boutliers | Outlier Detection and Influence Diagnostics for Meta-Analysis |
| BoutrosLab.plotting.general | Functions to Create Publication-Quality Plots |
| box | Write Reusable, Composable and Modular R Code |
| box.linters | Linters for 'box' Modules |
| box.lsp | Provides 'box' Compatibility for 'languageserver' |
| boxcoxmix | Box-Cox-Type Transformations for Linear and Logistic Models with Random Effects |
| boxfilter | Filter Noisy Data |
| boxly | Interactive Box Plot |
| boxplotcluster | Clustering Method Based on Boxplot Statistics |
| boxplotdbl | Double Box Plot for Two-Axes Correlation |
| boxr | Interface for the 'Box.com API' |
| bp | Blood Pressure Analysis in R |
| bpa | Basic Pattern Analysis |
| bpAcc | Blood Pressure Device Accuracy Evaluation: Statistical Considerations |
| bpbounds | Nonparametric Bounds for the Average Causal Effect Due to Balke and Pearl and Extensions |
| bpca | Biplot of Multivariate Data Based on Principal Components Analysis |
| bpcp | Beta Product Confidence Procedure for Right Censored Data |
| bpDir | Boxplots for Directional Data |
| bpgmm | Bayesian Model Selection Approach for Parsimonious Gaussian Mixture Models |
| BPM | Bayesian Purity Model to Estimate Tumor Purity |
| bpmnR | Support for BPMN (Business Process Management Notation) Models |
| bpmnVisualizationR | Visualize Process Execution Data on 'BPMN' Diagrams |
| bpnreg | Bayesian Projected Normal Regression Models for Circular Data |
| bpp | Computations Around Bayesian Predictive Power |
| bpr | Fitting Bayesian Poisson Regression |
| BPrinStratTTE | Causal Effects in Principal Strata Defined by Antidrug Antibodies |
| bqror | Bayesian Quantile Regression for Ordinal Models |
| bqtl | Bayesian QTL Mapping Toolkit |
| bRacatus | A Method to Estimate the Accuracy and Biogeographical Status of Georeferenced Biological Data |
| BRACE | Bias Reduction Through Analysis of Competing Events (BRACE) |
| bracer | Brace Expansions |
| BRACoD.R | BRACoD: Bayesian Regression Analysis of Compositional Data |
| brada | Bayesian Response-Adaptive Design Analysis |
| BradleyTerry2 | Bradley-Terry Models |
| braggR | Calculate the Revealed Aggregator of Probability Predictions |
| braidReports | Visualize Combined Action Response Surfaces and Report BRAID Analyses |
| braidrm | Fitting Combined Action with the BRAID Response Surface Model |
| braids | The Braid Groups |
| BrailleR | Improved Access for Blind Users |
| BrainCon | Inference the Partial Correlations Based on Time Series Data |
| brainGraph | Graph Theory Analysis of Brain MRI Data |
| brainKCCA | Region-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis |
| brainR | Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging |
| BranchGLM | Efficient Best Subset Selection for GLMs via Branch and Bound Algorithms |
| Branching | Simulation and Estimation for Branching Processes |
| brandwatchR | 'Brandwatch' API to R |
| brant | Test for Parallel Regression Assumption |
| braQCA | Bootstrapped Robustness Assessment for Qualitative Comparative Analysis |
| brassica | 1970s BASIC Interpreter |
| bratteli | Deal with Bratteli Graphs |
| bravo | Bayesian Screening and Variable Selection |
| BrazilCrime | Accesses Brazilian Public Security Data from SINESP Since 2015 |
| BrazilMet | Download and Processing of Automatic Weather Stations (AWS) Data of INMET-Brazil |
| BRBVS | Variable Selection and Ranking in Copula Survival Models Affected by General Censoring Scheme |
| BRcal | Boldness-Recalibration of Binary Events |
| brclimr | Fetch Zonal Statistics of Weather Indicators for Brazilian Municipalities |
| BRDT | Binomial Reliability Demonstration Tests |
| brea | Bayesian Recurrent Events Analysis |
| bread | Analyze Big Files Without Loading Them in Memory |
| BREADR | Estimates Degrees of Relatedness (Up to the Second Degree) for Extreme Low-Coverage Data |
| breakaway | Species Richness Estimation and Modeling |
| breakDown | Model Agnostic Explainers for Individual Predictions |
| breakfast | Methods for Fast Multiple Change-Point/Break-Point Detection and Estimation |
| breakpoint | An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |
| BreakPoints | Identify Breakpoints in Series of Data |
| breathtestcore | Core Functions to Read and Fit 13c Time Series from Breath Tests |
| breathteststan | Stan-Based Fit to Gastric Emptying Curves |
| bReeze | Functions for Wind Resource Assessment |
| BRETIGEA | Brain Cell Type Specific Gene Expression Analysis |
| brew | Templating Framework for Report Generation |
| brglm | Bias Reduction in Binomial-Response Generalized Linear Models |
| brglm2 | Bias Reduction in Generalized Linear Models |
| brickset | Interface with the Brickset API for Getting Data About LEGO Sets |
| bridgedist | An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) |
| bridger | Bridge Hand Generator with Criteria Selector |
| bridger2 | Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data |
| bridgesampling | Bridge Sampling for Marginal Likelihoods and Bayes Factors |
| brif | A Tree and Forest Tool for Classification and Regression |
| briKmeans | Package for Brik, Fabrik and Fdebrik Algorithms to Initialise Kmeans |
| BRINDA | Computation of BRINDA Adjusted Micronutrient Biomarkers for Inflammation |
| brinton | A Graphical EDA Tool |
| brio | Basic R Input Output |
| briqr | Interface to the 'Briq' API |
| BRISC | Fast Inference for Large Spatial Datasets using BRISC |
| brisk | Bayesian Benefit Risk Analysis |
| BRL | Beta Record Linkage |
| brlrmr | Bias Reduction with Missing Binary Response |
| brm | Binary Regression Model |
| brms | Bayesian Regression Models using 'Stan' |
| brms.mmrm | Bayesian MMRMs using 'brms' |
| brmsmargins | Bayesian Marginal Effects for 'brms' Models |
| brnn | Bayesian Regularization for Feed-Forward Neural Networks |
| Brobdingnag | Very Large Numbers in R |
| BrokenAdaptiveRidge | Broken Adaptive Ridge Regression with Cyclops |
| brokenstick | Broken Stick Model for Irregular Longitudinal Data |
| brolgar | Browse Over Longitudinal Data Graphically and Analytically in R |
| broman | Karl Broman's R Code |
| broom | Convert Statistical Objects into Tidy Tibbles |
| broom.helpers | Helpers for Model Coefficients Tibbles |
| broom.mixed | Tidying Methods for Mixed Models |
| brotli | A Compression Format Optimized for the Web |
| BrownDog | Brown Dog R Interface |
| brpop | Brazilian Population Estimatives |
| Brq | Bayesian Analysis of Quantile Regression Models |
| brsim | Brainerd-Robinson Similarity Coefficient Matrix |
| bruceR | Broadly Useful Convenient and Efficient R Functions |
| BRugs | Interface to the 'OpenBUGS' MCMC Software |
| brulee | High-Level Modeling Functions with 'torch' |
| brunnermunzel | (Permuted) Brunner-Munzel Test |
| BRVM | Retrieve Historical Data of Companies Listed on the 'BRVM' Stock Exchange |
| brxx | Bayesian Test Reliability Estimation |
| bs4cards | Generate Bootstrap Cards |
| bs4Dash | A 'Bootstrap 4' Version of 'shinydashboard' |
| BSagri | Safety Assessment in Agricultural Field Trials |
| bsam | Bayesian State-Space Models for Animal Movement |
| bsamGP | Bayesian Spectral Analysis Models using Gaussian Process Priors |
| bscui | Build SVG Custom User Interface |
| BSDA | Basic Statistics and Data Analysis |
| bsearchtools | Binary Search Tools |
| bsgof | Birnbaum-Saunders Goodness-of-Fit Test |
| BSGW | Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression |
| bshazard | Nonparametric Smoothing of the Hazard Function |
| bSi | Modeling and Computing Biogenic Silica ('bSi') from Inland and Pelagic Sediments |
| bsicons | Easily Work with 'Bootstrap' Icons |
| bSims | Agent-Based Bird Point Count Simulator |
| bsitar | Bayesian Super Imposition by Translation and Rotation Growth Curve Analysis |
| bskyr | Interact with 'Bluesky' Social |
| BSL | Bayesian Synthetic Likelihood |
| bslib | Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown' |
| BsMD | Bayes Screening and Model Discrimination |
| bsnsing | Build Decision Trees with Optimal Multivariate Splits |
| BSPADATA | Bayesian Proposal to Fit Spatial Econometric Models |
| BSPBSS | Bayesian Spatial Blind Source Separation |
| bspcov | Bayesian Sparse Estimation of a Covariance Matrix |
| bspec | Bayesian Spectral Inference |
| bspline | B-Spline Interpolation and Regression |
| bsplinePsd | Bayesian Nonparametric Spectral Density Estimation Using B-Spline Priors |
| bsplus | Adds Functionality to the R Markdown + Shiny Bootstrap Framework |
| bspm | Bridge to System Package Manager |
| bspmma | Bayesian Semiparametric Models for Meta-Analysis |
| bsreg | Bayesian Spatial Regression Models |
| BSS | Brownian Semistationary Processes |
| BSSasymp | Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |
| bssm | Bayesian Inference of Non-Linear and Non-Gaussian State Space Models |
| bssn | Birnbaum-Saunders Model |
| BSSoverSpace | Blind Source Separation for Multivariate Spatial Data using Eigen Analysis |
| BSSprep | Whitening Data as Preparation for Blind Source Separation |
| bst | Gradient Boosting |
| bsTools | Create HTML Content with Bootstrap 5 Classes and Layouts |
| bstrl | Bayesian Streaming Record Linkage |
| bsts | Bayesian Structural Time Series |
| bsub | Submitter and Monitor of the 'LSF Cluster' |
| bsvars | Bayesian Estimation of Structural Vector Autoregressive Models |
| bsvarSIGNs | Bayesian SVARs with Sign, Zero, and Narrative Restrictions |
| BSW | Fitting a Log-Binomial Model using the Bekhit-Schöpe-Wagenpfeil (BSW) Algorithm |
| bsynth | Bayesian Synthetic Control |
| BT | (Adaptive) Boosting Trees Algorithm |
| btb | Beyond the Border - Kernel Density Estimation for Urban Geography |
| BTdecayLasso | Bradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso |
| btergm | Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood |
| BTLLasso | Modelling Heterogeneity in Paired Comparison Data |
| BTM | Biterm Topic Models for Short Text |
| BTSPAS | Bayesian Time-Stratified Population Analysis |
| BTSR | Bounded Time Series Regression |
| BTtest | Estimate the Number of Factors in Large Nonstationary Datasets |
| BTTL | Bradley-Terry Transfer Learning |
| BTYD | Implementing BTYD Models with the Log Sum Exp Patch |
| BTYDplus | Probabilistic Models for Assessing and Predicting your Customer Base |
| bubbleHeatmap | Produces 'bubbleHeatmap' Plots for Visualising Metabolomics Data |
| bubblyr | Beautiful Bubbles for 'shiny' and 'rmarkdown' Backgrounds |
| BUCSS | Bias and Uncertainty Corrected Sample Size |
| Buddle | A Deep Learning for Statistical Classification and Regression Analysis with Random Effects |
| buildmer | Stepwise Elimination and Term Reordering for Mixed-Effects Regression |
| buildr | Organize & Run Build Scripts Comfortably |
| BuildSys | System for Building and Debugging C/C++ Dynamic Libraries |
| bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |
| bulkAnalyseR | Interactive Shiny App for Bulk Sequencing Data |
| bulkQC | Quality Control and Outlier Identification in Bulk for Multicenter Trials |
| bulkreadr | The Ultimate Tool for Reading Data in Bulk |
| bulletcp | Automatic Groove Identification via Bayesian Changepoint Detection |
| bulletr | Algorithms for Matching Bullet Lands |
| bullishTrader | Bullish Trading Strategies Through Graphs |
| bullseye | Visualising Multiple Pairwise Variable Correlations and Other Scores |
| bullwhipgame | Bullwhip Effect Demo in Shiny |
| bumbl | Tools for Modeling Bumblebee Colony Growth and Decline |
| bumblebee | Quantify Disease Transmission Within and Between Population Groups |
| bunching | Estimate Bunching |
| bunchr | Analyze Bunching in a Kink or Notch Setting |
| bundesbank | Download Data from Bundesbank |
| bundesligR | All Final Tables of the Bundesliga |
| bundle | Serialize Model Objects with a Consistent Interface |
| bupaR | Business Process Analysis in R |
| bupaverse | Easily Install and Load the 'bupaverse' |
| burgle | 'Burgle': Stealing the Necessary Parts of Model Objects |
| burnr | Forest Fire History Analysis |
| bursa | R Wrapper for Bursa Municipality Open Data Portal |
| BurStFin | Burns Statistics Financial |
| BurStMisc | Burns Statistics Miscellaneous |
| bursts | Markov Model for Bursty Behavior in Streams |
| busdater | Standard Date Calculations for Business |
| BusinessDuration | Calculates Business Duration Between Two Dates |
| businessPlanR | Simple Modelling Tools for Business Plans |
| butcher | Model Butcher |
| butterflyOptions | Trading Butterfly Options Strategies |
| BuyseTest | Generalized Pairwise Comparisons |
| Bvalue | B-Value and Empirical Equivalence Bound |
| BVAR | Hierarchical Bayesian Vector Autoregression |
| bvarsv | Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |
| bvartools | Bayesian Inference of Vector Autoregressive and Error Correction Models |
| BVARverse | Tidy Bayesian Vector Autoregression |
| bvhar | Bayesian Vector Heterogeneous Autoregressive Modeling |
| bvls | The Stark-Parker algorithm for bounded-variable least squares |
| bvpa | Bivariate Pareto Distribution |
| BVSNLP | Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors |
| bwd | Backward Procedure for Change-Point Detection |
| bWGR | Bayesian Whole-Genome Regression |
| BWGS | BreedWheat Genomic Selection Pipeline |
| bwimage | Describe Image Patterns in Natural Structures |
| BwQuant | Bandwidth Selectors for Local Linear Quantile Regression |
| bws | Bayesian Weighted Sums |
| BWStest | Baumgartner Weiss Schindler Test of Equal Distributions |
| bwsTools | Tools for Case 1 Best-Worst Scaling (MaxDiff) Designs |
| bysykkel | Get City Bike Data from Norway |
| bytescircle | Statistics About Bytes Contained in a File as a Circle Plot |
| bzinb | Bivariate Zero-Inflated Negative Binomial Model Estimator |
| c060 | Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |
| C19dNUTS | Dataset of Regional COVID-19 Deaths per 100,000 Pop (NUTS) |
| c212 | Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) |
| c2c | Compare Two Classifications or Clustering Solutions of Varying Structure |
| c2z | A Reference Manager |
| c3 | 'C3.js' Chart Library |
| c3net | Inferring Large-Scale Gene Networks with C3NET |
| C443 | See a Forest for the Trees |
| C50 | C5.0 Decision Trees and Rule-Based Models |
| ca | Simple, Multiple and Joint Correspondence Analysis |
| CA3variants | Three-Way Correspondence Analysis Variants |
| cabinets | Project Specific Workspace Organization Templates |
| cabootcrs | Bootstrap Confidence Regions for Simple and Multiple Correspondence Analysis |
| cacc | Conjunctive Analysis of Case Configurations |
| cache | Cache and Retrieve Computation Results |
| cachem | Cache R Objects with Automatic Pruning |
| CACIMAR | Cross-Species Analysis of Cell Identities, Markers and Regulations |
| cacIRT | Classification Accuracy and Consistency under Item Response Theory |
| CaDENCE | Conditional Density Estimation Network Construction and Evaluation |
| CADFtest | A Package to Perform Covariate Augmented Dickey-Fuller Unit Root Tests |
| caesar | Encrypts and Decrypts Strings |
| CAESAR.Suite | CAESAR: a Cross-Technology and Cross-Resolution Framework for Spatial Omics Annotation |
| caffsim | Simulation of Plasma Caffeine Concentrations by Using Population Pharmacokinetic Model |
| CAGR | Compound Annual Growth Rate |
| cAIC4 | Conditional Akaike Information Criterion for 'lme4' and 'nlme' |
| CAinterprTools | Graphical Aid in Correspondence Analysis Interpretation and Significance Testings |
| Cairo | R Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG, PostScript) and Display (X11 and Win32) Output |
| CAISEr | Comparison of Algorithms with Iterative Sample Size Estimation |
| calACS | Calculations for All Common Subsequences |
| CALANGO | Comparative Analysis with Annotation-Based Genomic Components |
| CalcThemAll.PRM | Calculate Pesticide Risk Metric (PRM) Values from Multiple Pesticides...Calc Them All |
| Calculator.LR.FNs | Calculator for LR Fuzzy Numbers |
| calculus | High Dimensional Numerical and Symbolic Calculus |
| calcUnique | Simple Wrapper for Computationally Expensive Functions |
| calendar | Create, Read, Write, and Work with 'iCalendar' Files, Calendars and Scheduling Data |
| calendR | Ready to Print Monthly and Yearly Calendars Made with 'ggplot2' |
| calendRio | 'calendR' Fork with Additional Features (Backwards Compatible) |
| CALF | Coarse Approximation Linear Function |
| CALIBERrfimpute | Multiple Imputation Using MICE and Random Forest |
| calibmsm | Calibration Plots for the Transition Probabilities from Multistate Models |
| calibrar | Automated Parameter Estimation for Complex Models |
| calibrate | Calibration of Scatterplot and Biplot Axes |
| calibrateBinary | Calibration for Computer Experiments with Binary Responses |
| CalibrateSSB | Weighting and Estimation for Panel Data with Non-Response |
| calibrationband | Calibration Bands |
| CalibrationCurves | Calibration Performance |
| calibrator | Bayesian Calibration of Complex Computer Codes |
| CalibratR | Mapping ML Scores to Calibrated Predictions |
| calidad | Assesses the Quality of Estimates Made by Complex Sample Designs |
| callback | Computes Statistics from Discrimination Experimental Data |
| callme | Easily Compile and Call Inline C Functions |
| callr | Call R from R |
| callsync | Recording Synchronisation, Call Detection and Assignment, Audio Analysis |
| calmate | Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation |
| calmr | Canonical Associative Learning Models and their Representations |
| calpassapi | R Interface to Access CalPASS API |
| CalSim | The Calibration Simplex |
| camcorder | Record Your Plot History |
| CamelUp | 'CamelUp' Board Game as a Teaching Aid for Introductory Statistics |
| camerondata | Datasets from "Microeconometrics: Methods and Applications" by Cameron and Trivedi |
| CAMML | Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling |
| campaignmanageR | Connect to Campaign Manager via the 'Windsor.ai' API |
| campfin | Wrangle Campaign Finance Data |
| campsis | Generic PK/PD Simulation Platform CAMPSIS |
| campsismod | Generic Implementation of a PK/PD Model |
| camsRad | Client for CAMS Radiation Service |
| camtrapdp | Read and Manipulate Camera Trap Data Packages |
| camtrapR | Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses |
| canadamaps | Maps of the Political and Administrative Divisions of Canada |
| canadianmaps | Effortlessly Create Stunning Canadian Maps |
| canaper | Categorical Analysis of Neo- And Paleo-Endemism |
| cancensus | Access, Retrieve, and Work with Canadian Census Data and Geography |
| CancerEvolutionVisualization | Publication Quality Phylogenetic Tree Plots |
| cancerGI | Analyses of Cancer Gene Interaction |
| CancerGram | Prediction of Anticancer Peptides |
| cancerR | Classification of Cancer Using Administrative Data |
| cancerscreening | Streamline Access to Cancer Screening Data |
| candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |
| Canek | Batch Correction of Single Cell Transcriptome Data |
| Canopy | Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing |
| canprot | Chemical Analysis of Proteins |
| cansim | Accessing Statistics Canada Data Table and Vectors |
| CANSIM2R | Directly Extracts Complete CANSIM Data Tables |
| canvasXpress | Visualization Package for CanvasXpress in R |
| canvasXpress.data | Datasets for the 'canvasXpress' Package |
| cape | Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice |
| caper | Comparative Analyses of Phylogenetics and Evolution in R |
| capesData | Data on Scholarships in CAPES International Mobility Programs |
| capitalR | Capital Budgeting Analysis, Annuity Loan Calculations and Amortization Schedules |
| capl | Compute and Visualize CAPL-2 Scores and Interpretations |
| caplot | Correspondence Analysis with Geometric Frequency Interpretation |
| capm | Companion Animal Population Management |
| capn | Capital Asset Pricing for Nature |
| CaPO4Sim | A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis |
| captr | Client for the Captricity API |
| capushe | CAlibrating Penalities Using Slope HEuristics |
| car | Companion to Applied Regression |
| caracas | Computer Algebra |
| caRamel | Automatic Calibration by Evolutionary Multi Objective Algorithm |
| carat | Covariate-Adaptive Randomization for Clinical Trials |
| CARBayes | Spatial Generalised Linear Mixed Models for Areal Unit Data |
| CARBayesdata | Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages |
| CARBayesST | Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data |
| carbonate | Interact with 'carbon.js' |
| carbondate | Calibration and Summarisation of Radiocarbon Dates |
| carcass | Estimation of the Number of Fatalities from Carcass Searches |
| card | Cardiovascular and Autonomic Research Design |
| card.pro | Lightweight Modern & Responsive Card Component for 'shiny' |
| carData | Companion to Applied Regression Data Sets |
| cardidates | Identification of Cardinal Dates in Ecological Time Series |
| cardinalR | Collection of Data Structures |
| cards | Analysis Results Data |
| cardx | Extra Analysis Results Data Utilities |
| care | High-Dimensional Regression and CAR Score Variable Selection |
| care4cmodel | Carbon-Related Assessment of Silvicultural Concepts |
| caRecall | Government of Canada Vehicle Recalls Database API Wrapper |
| careless | Procedures for Computing Indices of Careless Responding |
| caresid | Correspondence Analysis Plot and Associations Visualisation |
| caret | Classification and Regression Training |
| caretEnsemble | Ensembles of Caret Models |
| caretForecast | Conformal Time Series Forecasting Using State of Art Machine Learning Algorithms |
| carfima | Continuous-Time Fractionally Integrated ARMA Process for Irregularly Spaced Long-Memory Time Series Data |
| cargo | Develop R Packages using Rust |
| caribou | Estimation of Caribou Abundance Based on Radio Telemetry Data |
| CarletonStats | Functions for Statistics Classes at Carleton College |
| Carlson | Carlson Elliptic Integrals and Incomplete Elliptic Integrals |
| CARM | Covariate-Adjusted Adaptive Randomization via Mahalanobis-Distance |
| CARME | CAR-MM Modelling in Stan |
| CARMS | Continuous Time Markov Rate Modeling for Reliability Analysis |
| caROC | Continuous Biomarker Evaluation with Adjustment of Covariates |
| caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |
| carpenter | Build Common Tables of Summary Statistics for Reports |
| carrier | Isolate Functions for Remote Execution |
| CARRoT | Predicting Categorical and Continuous Outcomes Using One in Ten Rule |
| carSurv | Correlation-Adjusted Regression Survival (CARS) Scores |
| cartograflow | Filtering Matrix for Flow Mapping |
| cartogram | Create Cartograms with R |
| cartogramR | Continuous Cartogram |
| cartographer | Turn Place Names into Map Data |
| cartographr | Crafting Print-Ready Maps and Layered Visualizations |
| cartography | Thematic Cartography |
| casabourse | Casablanca Stock Exchange Data |
| Cascade | Selection, Reverse-Engineering and Prediction in Cascade Networks |
| CascadeData | Experimental Data of Cascade Experiments in Genomics |
| cascadeSelect | A Cascade Select Input for 'Shiny' |
| CASCORE | Covariate Assisted Spectral Clustering on Ratios of Eigenvectors |
| cascsim | Casualty Actuarial Society Individual Claim Simulator |
| casebase | Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression |
| CaseBasedReasoning | Case Based Reasoning |
| CaseCohortCoxSurvival | Case-Cohort Cox Survival Inference |
| caseMatch | Identify Similar Cases for Qualitative Case Studies |
| cases | Stratified Evaluation of Subgroup Classification Accuracy |
| casino | Play Casino Games |
| CASMAP | Detection of Statistically Significant Combinations of SNPs in Association Mapping |
| CASMI | 'CASMI'-Based Functions |
| cassandRa | Finds Missing Links and Metric Confidence Intervals in Ecological Bipartite Networks |
| cassowaryr | Compute Scagnostics on Pairs of Numeric Variables in a Data Set |
| CAST | 'caret' Applications for Spatial-Temporal Models |
| castor | Efficient Phylogenetics on Large Trees |
| cat | Analysis and Imputation of Categorical-Variable Datasets with Missing Values |
| cat2cat | Handling an Inconsistently Coded Categorical Variable in a Longitudinal Dataset |
| cata | Analysis of Check-All-that-Apply (CATA) Data |
| catalog | Access the 'Spark Catalog' API via 'sparklyr' |
| CatastRo | Interface to the API 'Sede Electronica Del Catastro' |
| catch | Covariate-Adjusted Tensor Classification in High-Dimensions |
| catcont | Test, Identify, Select and Mutate Categorical or Continuous Values |
| catdap | Categorical Data Analysis Program Package |
| catdata | Categorical Data |
| CatDataAnalysis | Datasets for Categorical Data Analysis by Agresti |
| CatDyn | Fishery Stock Assessment by Catch Dynamics Models |
| categoryEncodings | Category Variable Encodings |
| CatEncoders | Encoders for Categorical Variables |
| catfun | Categorical Data Analysis |
| cati | Community Assembly by Traits: Individuals and Beyond |
| catIrt | Simulate IRT-Based Computerized Adaptive Tests |
| catlearn | Formal Psychological Models of Categorization and Learning |
| catmap | Case-Control and TDT Meta-Analysis Package |
| catmaply | Heatmap for Categorical Data using 'plotly' |
| caTools | Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc |
| CatPredi | Optimal Categorisation of Continuous Variables in Prediction Models |
| catR | Generation of IRT Response Patterns under Computerized Adaptive Testing |
| CatReg | Solution Paths for Linear and Logistic Regression Models with Categorical Predictors, with SCOPE Penalty |
| catregs | Post-Estimation Functions for Generalized Linear Mixed Models |
| cats | Cohort Platform Trial Simulation |
| catseyes | Create Catseye Plots Illustrating the Normal Distribution of the Means |
| catsim | Binary and Categorical Image Similarity Index |
| catSurv | Computerized Adaptive Testing for Survey Research |
| CATT | The Cochran-Armitage Trend Test |
| CATTexact | Computation of the p-Value for the Exact Conditional Cochran-Armitage Trend Test |
| CauchyCP | Powerful Test for Survival Data under Non-Proportional Hazards |
| cauchypca | Robust Principal Component Analysis Using the Cauchy Distribution |
| cauphy | Trait Evolution on Phylogenies Using the Cauchy Process |
| causact | Fast, Easy, and Visual Bayesian Inference |
| causal.decomp | Causal Decomposition Analysis |
| causalBatch | Causal Batch Effects |
| causalCmprsk | Nonparametric and Cox-Based Estimation of Average Treatment Effects in Competing Risks |
| causaldata | Example Data Sets for Causal Inference Textbooks |
| causalDisco | Tools for Causal Discovery on Observational Data |
| causaldrf | Estimating Causal Dose Response Functions |
| causaleffect | Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models |
| CausalGAM | Estimation of Causal Effects with Generalized Additive Models |
| CausalGPS | Matching on Generalized Propensity Scores with Continuous Exposures |
| causalHyperGraph | Drawing Causal Hypergraphs |
| CausalImpact | Inferring Causal Effects using Bayesian Structural Time-Series Models |
| CausalMBSTS | MBSTS Models for Causal Inference and Forecasting |
| CausalMetaR | Causally Interpretable Meta-Analysis |
| CausalModels | Causal Inference Modeling for Estimation of Causal Effects |
| causaloptim | An Interface to Specify Causal Graphs and Compute Bounds on Causal Effects |
| causalOT | Optimal Transport Weights for Causal Inference |
| causalPAF | Causal Effect for Population Attributable Fractions (PAF) |
| CausalQueries | Make, Update, and Query Binary Causal Models |
| causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |
| causalSLSE | Semiparametric Least Squares Inference for Causal Effects |
| causalweight | Estimation Methods for Causal Inference Based on Inverse Probability Weighting |
| CausCor | Calculate Correlations and Estimate Causality |
| CautiousLearning | Control Charts with Guaranteed In-Control Performance and Cautious Parameters Learning |
| CAvariants | Correspondence Analysis Variants |
| caviarpd | Cluster Analysis via Random Partition Distributions |
| CB2 | CRISPR Pooled Screen Analysis using Beta-Binomial Test |
| cba | Clustering for Business Analytics |
| cbanalysis | Coffee Break Descriptive Analysis |
| cbass | Classification – Bayesian Adaptive Smoothing Splines |
| cbbinom | Continuous Analog of a Beta-Binomial Distribution |
| CBCgrps | Compare Baseline Characteristics Between Groups |
| cbcTools | Choice-Based Conjoint Experiment Design Generation and Power Evaluation in R |
| cbinom | Continuous Analog of a Binomial Distribution |
| cbioportalR | Browse and Query Clinical and Genomic Data from cBioPortal |
| cbl | Causal Discovery under a Confounder Blanket |
| CBnetworkMA | Contrast-Based Bayesian Network Meta Analysis |
| CBPE | Correlation-Based Penalized Estimators |
| CBPS | Covariate Balancing Propensity Score |
| cbq | Conditional Binary Quantile Models |
| cbsodataR | Statistics Netherlands (CBS) Open Data API Client |
| CBSr | Fits Cubic Bezier Spline Functions to Intertemporal and Risky Choice Data |
| CBT | Confidence Bound Target Algorithm |
| CC | Control Charts |
| CCA | Canonical Correlation Analysis |
| CCAMLRGIS | Antarctic Spatial Data Manipulation |
| ccaPP | (Robust) Canonical Correlation Analysis via Projection Pursuit |
| cccd | Class Cover Catch Digraphs |
| cccm | Crossed Classification Credibility Model |
| cccp | Cone Constrained Convex Problems |
| cccrm | Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |
| CCd | The Cauchy-Cacoullos (Discrete Cauchy) Distribution |
| ccda | Combined Cluster and Discriminant Analysis |
| ccdR | Utilities for Interacting with the 'CTX' APIs |
| cchs | Cox Model for Case-Cohort Data with Stratified Subcohort-Selection |
| cchsflow | Transforming and Harmonizing CCHS Variables |
| ccid | Cross-Covariance Isolate Detect: a New Change-Point Method for Estimating Dynamic Functional Connectivity |
| cclust | Convex Clustering Methods and Clustering Indexes |
| CCM | Correlation Classification Method |
| ccmEstimator | Comparative Causal Mediation Estimation |
| ccml | Consensus Clustering for Different Sample Coverage Data |
| ccmm | Compositional Mediation Model |
| CCMMR | Minimization of the Convex Clustering Loss Function |
| ccmReportR | Wraps 'CCM' with Utility Functions |
| ccoptimalmatch | Implementation of Case-Control Optimal Matching |
| ccostr | Estimation of Mean Costs in Censored Data |
| CCP | Significance Tests for Canonical Correlation Analysis (CCA) |
| ccpsyc | Methods for Cross-Cultural Psychology |
| ccRemover | Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data |
| ccrs | Correct and Cluster Response Style Biased Data |
| ccrtm | Coupled Chain Radiative Transfer Models |
| CCSRfind | Convert ICD-10 Codes to CCSR Codes |
| ccss | Cluster Circular Systematic Sampling |
| ccTensor | CUR/CX Tensor Decomposition |
| cctest | Canonical Correlations and Tests of Independence |
| cctools | Tools for the Continuous Convolution Trick in Nonparametric Estimation |
| CCTpack | Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications |
| CCWeights | Perform Weighted Linear Regression for Calibration Curve |
| cd | CD Data for Entity Resolution |
| cdata | Fluid Data Transformations |
| CDatanet | Econometrics of Network Data |
| cdcatR | Cognitive Diagnostic Computerized Adaptive Testing |
| CDCPLACES | Access the 'CDC PLACES' API |
| cdcsis | Conditional Distance Correlation Based Feature Screening and Conditional Independence Inference |
| cder | Interface to the California Data Exchange Center (CDEC) |
| cdfquantreg | Quantile Regression for Random Variables on the Unit Interval |
| CDFt | Downscaling and Bias Correction via Non-Parametric CDF-Transform |
| cdgd | Causal Decomposition of Group Disparities |
| CDGHMM | Hidden Markov Models for Multivariate Panel Data |
| cdlei | Cause-Deleted Life Expectancy Improvement Procedure |
| cdlTools | Tools to Download and Work with USDA Cropscape Data |
| CDM | Cognitive Diagnosis Modeling |
| CDMConnector | Connect to an OMOP Common Data Model |
| cdmTools | Useful Tools for Cognitive Diagnosis Modeling |
| cdom | R Functions to Model CDOM Spectra |
| cdparcoord | Top Frequency-Based Parallel Coordinates |
| cdrcR | Load 'CDRC' Data |
| cds | Constrained Dual Scaling for Detecting Response Styles |
| CDsampling | 'CDsampling': Constraint Sampling in Paid Research Studies |
| CDSE | 'Copernicus Data Space Ecosystem' API Wrapper |
| CDSS | Course-Dependent Skill Structures |
| CDVI | Cuddy-Della Valle Index for Capturing the Instability in Time Series Data |
| CDVineCopulaConditional | Sampling from Conditional C- and D-Vine Copulas |
| ceas | Cellular Energetics Analysis Software |
| CEC | Cross-Entropy Clustering |
| CEDA | CRISPR Screen and Gene Expression Differential Analysis |
| CEEMDANML | CEEMDAN Decomposition Based Hybrid Machine Learning Models |
| ceg | Chain Event Graph |
| CEGO | Combinatorial Efficient Global Optimization |
| celestial | Collection of Common Astronomical Conversion Routines and Functions |
| cellKey | Consistent Perturbation of Statistical Frequency- And Magnitude Tables |
| cellOrigins | Finds RNASeq Source Tissues Using In Situ Hybridisation Data |
| cellpypes | Cell Type Pipes for Single-Cell RNA Sequencing Data |
| cellranger | Translate Spreadsheet Cell Ranges to Rows and Columns |
| celltrackR | Motion Trajectory Analysis |
| cellVolumeDist | Functions to Fit Cell Volume Distributions and Thereby Estimate Cell Growth Rates and Division Times |
| cellWise | Analyzing Data with Cellwise Outliers |
| cem | Coarsened Exact Matching |
| cemco | Fit 'CemCO' Algorithm |
| CenBAR | Broken Adaptive Ridge AFT Model with Censored Data |
| cencrne | Consistent Estimation of the Number of Communities via Regularized Network Embedding |
| cenGAM | Censored Regression with Smooth Terms |
| cenROC | Estimating Time-Dependent ROC Curve and AUC for Censored Data |
| censable | Making Census Data More Usable |
| censCov | Linear Regression with a Randomly Censored Covariate |
| CensMFM | Finite Mixture of Multivariate Censored/Missing Data |
| censo2017 | Base de Datos de Facil Acceso del Censo 2017 de Chile (2017 Chilean Census Easy Access Database) |
| censobr | Download Data from Brazil's Population Census |
| censorcopula | Estimate Parameter of Bivariate Copula |
| censored | 'parsnip' Engines for Survival Models |
| censReg | Censored Regression (Tobit) Models |
| CensSpatial | Censored Spatial Models |
| Census2016 | Data from the Australian Census 2016 |
| censusapi | Retrieve Data from the Census APIs |
| censusr | Collect Data from the Census API |
| centerline | Extract Centerline from Closed Polygons |
| centiserve | Find Graph Centrality Indices |
| centr | Weighted and Unweighted Spatial Centers |
| centrifugeR | Non-Trivial Balance of Centrifuge Rotors |
| CEOdata | Datasets of the CEO (Centre d'Estudis d'Opinio) for Opinion Polls in Catalonia |
| CEoptim | Cross-Entropy R Package for Optimization |
| CePa | Centrality-Based Pathway Enrichment |
| cepiigeodist | CEPII's GeoDist Datasets |
| cepp | Context Driven Exploratory Projection Pursuit |
| cepR | Busca CEPs Brasileiros |
| cepreader | Read 'CEP' and Legacy 'CANOCO' Files |
| cepumd | Calculate Consumer Expenditure Survey (CE) Annual Estimates |
| cequre | Censored Quantile Regression & Monotonicity-Respecting Restoring |
| ceramic | Download Online Imagery Tiles |
| cereal | Serialize 'vctrs' Objects to 'JSON' |
| CERFIT | Causal Effect Random Forest of Interaction Tress |
| CerioliOutlierDetection | Outlier Detection Using the Iterated RMCD Method of Cerioli (2010) |
| CeRNASeek | Identification and Analysis of ceRNA Regulation |
| ceRtainty | Certainty Equivalent |
| Certara.NLME8 | Utilities for Certara's Nonlinear Mixed-Effects Modeling Engine |
| Certara.R | Easily Install Pharmacometric Packages and Shiny Applications Developed by Certara |
| ceser | Cluster Estimated Standard Errors |
| cesR | Access the Canadian Election Study Datasets |
| cetcolor | CET Perceptually Uniform Colour Maps |
| ceterisParibus | Ceteris Paribus Profiles |
| cfa | Configural Frequency Analysis (CFA) |
| CFAcoop | Colony Formation Assay: Taking into Account Cellular Cooperation |
| CFC | Cause-Specific Framework for Competing-Risk Analysis |
| cfda | Categorical Functional Data Analysis |
| cfdecomp | Counterfactual Decomposition: MC Integration of the G-Formula |
| CFF | Simple Similarity for User-Based Collaborative Filtering Systems |
| cffdrs | Canadian Forest Fire Danger Rating System |
| cffr | Generate Citation File Format ('cff') Metadata for R Packages |
| cfid | Identification of Counterfactual Queries in Causal Models |
| CFilt | Recommendation by Collaborative Filtering |
| cfma | Causal Functional Mediation Analysis |
| cfmortality | Cystic Fibrosis Survival Prediction Model Based on Stanojevic Model |
| CFO | CFO-Type Designs in Phase I/II Clinical Trials |
| cforward | Forward Selection using Concordance/C-Index |
| cfr | Estimate Disease Severity and Case Ascertainment |
| cft | Climate Futures Toolbox |
| CFtime | Using CF-Compliant Calendars with Climate Projection Data |
| cg | Compare Groups, Analytically and Graphically |
| cgaim | Constrained Groupwise Additive Index Models |
| cgal4h | 'CGAL' Version 4 C++ Header Files |
| cgam | Constrained Generalized Additive Model |
| cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it |
| CGE | Computing General Equilibrium |
| CGGP | Composite Grid Gaussian Processes |
| cglasso | Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values |
| cglm | Fits Conditional Generalized Linear Models |
| cgmanalysis | Clean and Analyze Continuous Glucose Monitor Data |
| CGManalyzer | Continuous Glucose Monitoring Data Analyzer |
| cgmquantify | Analyzing Glucose and Glucose Variability |
| CGNM | Cluster Gauss-Newton Method |
| CGP | Composite Gaussian Process Models |
| CGPfunctions | Powell Miscellaneous Functions for Teaching and Learning Statistics |
| CGR | Compound Growth Rate for Capturing the Growth Rate Over the Period |
| cgwtools | Miscellaneous Tools |
| ch | About some Small Functions |
| chainbinomial | Chain Binomial Models for Analysis of Infectious Disease Data |
| ChainLadder | Statistical Methods and Models for Claims Reserving in General Insurance |
| chameleon | Automatic Colors for Multi-Dimensional Data |
| chandwich | Chandler-Bate Sandwich Loglikelihood Adjustment |
| changepoint | Methods for Changepoint Detection |
| changepoint.geo | Geometrically Inspired Multivariate Changepoint Detection |
| changepoint.influence | Package to Calculate the Influence of the Data on a Changepoint Segmentation |
| changepoint.np | Methods for Nonparametric Changepoint Detection |
| changepoints | A Collection of Change-Point Detection Methods |
| changepointsVar | Change-Points Detections for Changes in Variance |
| ChangePointTaylor | Identify Changes in Mean |
| ChangepointTesting | Change Point Estimation for Clustered Signals |
| changepointTests | Change Point Tests for Joint Distributions and Copulas |
| changer | Change R Package Name |
| changeS | S-Curve Fit for Changepoint Analysis |
| ChannelAttribution | Markov Model for Online Multi-Channel Attribution |
| ChannelAttributionApp | Shiny Web Application for the Multichannel Attribution Problem |
| chantrics | Loglikelihood Adjustments for Econometric Models |
| Chaos01 | 0-1 Test for Chaos |
| ChaosGame | Chaos Game |
| charcuterie | Handle Strings as Vectors of Characters |
| charlatan | Make Fake Data |
| charlesschwabapi | Wrapper Functions Around 'Charles Schwab Individual Trader API' |
| chartql | Simplified Language for Plots and Charts |
| chatAI4R | Chat-Based Interactive Artificial Intelligence for R |
| chatgpt | Interface to 'ChatGPT' from R |
| chattr | Interact with Large Language Models in 'RStudio' |
| cheapr | Simple Functions to Save Time and Memory |
| cheatsheet | Download R Cheat Sheets Locally |
| checkarg | Check the Basic Validity of a (Function) Argument |
| CheckDigit | Calculate and Verify Check Digits |
| checkdown | Check-Fields and Check-Boxes for 'rmarkdown' |
| checked | Systematically Run R CMD Checks |
| checker | Checks 'R' Configuration Set Up Correctly Before Class |
| checkglobals | Static Analysis of R-Code Dependencies |
| checkhelper | Deal with Check Outputs |
| checkLuhn | Checks if a Number is Valid Using the Luhn Algorithm |
| checkmate | Fast and Versatile Argument Checks |
| checkpoint | Install Packages from Snapshots on the Checkpoint Server for Reproducibility |
| checkthat | Intuitive Unit Testing Tools for Data Manipulation |
| cheddar | Analysis and Visualisation of Ecological Communities |
| cheem | Interactively Explore Local Explanations with the Radial Tour |
| cheese | Tools for Working with Data During Statistical Analysis |
| chem.databases | Collection of 3 Chemical Databases from Public Sources |
| chem16S | Chemical Metrics for Microbial Communities |
| chemCal | Calibration Functions for Analytical Chemistry |
| chemdeg | Analysis of Chemical Degradation Kinetic Data |
| CHEMIST | Causal Inference with High-Dimensional Error-Prone Covariates and Misclassified Treatments |
| chemodiv | Analysing Chemodiversity of Phytochemical Data |
| chemometrics | Multivariate Statistical Analysis in Chemometrics |
| ChemoSpec | Exploratory Chemometrics for Spectroscopy |
| ChemoSpec2D | Exploratory Chemometrics for 2D Spectroscopy |
| ChemoSpecUtils | Functions Supporting Packages ChemoSpec and ChemoSpec2D |
| ChernoffDist | Chernoff's Distribution |
| cherry | Multiple Testing Methods for Exploratory Research |
| cherryblossom | Cherry Blossom Run Race Results |
| chess | Read, Write, Create and Explore Chess Games |
| chessboard | Create Network Connections Based on Chess Moves |
| ChessGmooG | FIDE Chess Players Ratings for 2015 and 2020 |
| chest | Change-in-Estimate Approach to Assess Confounding Effects |
| ChestVolume | Estimate the Chest Volume with Markers Data |
| chevron | Standard TLGs for Clinical Trials Reporting |
| CHFF | Closest History Flow Field Forecasting for Bivariate Time Series |
| chi | The Chi Distribution |
| chicane | Capture Hi-C Analysis Engine |
| childdevdata | Child Development Data |
| childesr | Accessing the 'CHILDES' Database |
| childfree | Access and Harmonize Childfree Demographic Data |
| childsds | Data and Methods Around Reference Values in Pediatrics |
| chilemapas | Mapas de las Divisiones Politicas y Administrativas de Chile (Maps of the Political and Administrative Divisions of Chile) |
| ChillModels | Processing Chill and Heat Models for Temperate Fruit Trees |
| chillR | Statistical Methods for Phenology Analysis in Temperate Fruit Trees |
| chinese.misc | Miscellaneous Tools for Chinese Text Mining and More |
| ChineseNames | Chinese Name Database 1930-2008 |
| chipPCR | Toolkit of Helper Functions to Pre-Process Amplification Data |
| chirps | API Client for CHIRPS and CHIRTS |
| chisq.posthoc.test | A Post Hoc Analysis for Pearson's Chi-Squared Test for Count Data |
| chisquare | Chi-Square and G-Square Test of Independence, Power and Residual Analysis, Measures of Categorical Association |
| chk | Check User-Supplied Function Arguments |
| chkptstanr | Checkpoint MCMC Sampling with 'Stan' |
| chlorpromazineR | Convert Antipsychotic Doses to Chlorpromazine Equivalents |
| CHMM | Coupled Hidden Markov Models |
| CHNCapitalStock | Compute Chinese Capital Stocks |
| chngpt | Estimation and Hypothesis Testing for Threshold Regression |
| CHNOSZ | Thermodynamic Calculations and Diagrams for Geochemistry |
| choiceDes | Design Functions for Choice Studies |
| ChoiceModelR | Choice Modeling in R |
| CHOIRBM | Plots the CHOIR Body Map |
| cholera | Amend, Augment and Aid Analysis of John Snow's Cholera Map |
| CholWishart | Cholesky Decomposition of the Wishart Distribution |
| choosepc | Choose the Number of Principal Components via Recistruction Error |
| choplump | Permutation Test for Some Positive and Many Zero Responses |
| chopthin | The Chopthin Resampler |
| ChoR | Chordalysis R Package |
| chords | Estimation in Respondent Driven Samples |
| choroplethr | Simplify the Creation of Choropleth Maps in R |
| choroplethrAdmin1 | Contains an Administrative-Level-1 Map of the World |
| choroplethrMaps | Contains Maps Used by the 'choroplethr' Package |
| chouca | A Stochastic Cellular Automaton Engine |
| christmas | Generation of Different Animated Christmas Cards |
| chromConverter | Chromatographic File Converter |
| chromer | Interface to Chromosome Counts Database API |
| chromoMap | Interactive Genomic Visualization of Biological Data |
| chromote | Headless Chrome Web Browser Interface |
| chromseq | Split Chromosome 'Fasta' File |
| chron | Chronological Objects which Can Handle Dates and Times |
| chronicle | Grammar for Creating R Markdown Reports |
| chronicler | Add Logging to Functions |
| chronochrt | Creating Chronological Charts |
| chronosphere | Evolving Earth System Variables |
| chunked | Chunkwise Text-File Processing for 'dplyr' |
| chunkhooks | Chunk Hooks for 'R Markdown' |
| chunkR | Read Tables in Chunks |
| chyper | Functions for Conditional Hypergeometric Distributions |
| CIAAWconsensus | Isotope Ratio Meta-Analysis |
| CIARA | Cluster Independent Algorithm for Rare Cell Types Identification |
| CICA | Clusterwise Independent Component Analysis |
| ciCalibrate | Calibration of Confidence Intervals to Support Intervals |
| ciccr | Causal Inference in Case-Control and Case-Population Studies |
| cicerone | Provide Tours of 'Shiny' Applications |
| CICI | Causal Inference with Continuous (Multiple Time Point) Interventions |
| CIEE | Estimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations |
| cif | Cointegrated ICU Forecasting |
| CIfinder | Estimate the Confidence Intervals for Predictive Values |
| cifti | Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files |
| ciftiTools | Tools for Reading, Writing, Viewing and Manipulating CIFTI Files |
| CIM | Compositional Impact of Migration |
| cimir | Interface to the CIMIS Web API |
| CIMTx | Causal Inference for Multiple Treatments with a Binary Outcome |
| cinaR | A Computational Pipeline for Bulk 'ATAC-Seq' Profiles |
| cinaRgenesets | Ready-to-Use Curated Gene Sets for 'cinaR' |
| CINE | Classification International Normalized of Education |
| CINID | Curculionidae INstar IDentification |
| CINmetrics | Calculate Chromosomal Instability Metrics |
| CINNA | Deciphering Central Informative Nodes in Network Analysis |
| cinterpolate | Interpolation From C |
| CIPerm | Computationally-Efficient Confidence Intervals for Mean Shift from Permutation Methods |
| cipheR | Encryption and Decryption with Text Ciphers |
| CIplot | Functions to Plot Confidence Interval |
| CIpostSelect | Confidence Interval Post-Selection of Variable |
| cir | Centered Isotonic Regression and Dose-Response Utilities |
| circacompare | Analyses of Circadian Data |
| CirceR | Construct Cohort Inclusion and Restriction Criteria Expressions |
| circhelp | Circular Analyses Helper Functions |
| circle | R Client Package for Circle CI |
| CirclesIntersections | Algorithm for Computation of the Intersection Areas of N Circles |
| circlesplot | Visualize Proportions with Circles in a Plot |
| circletyper | Curve Text Elements in 'Shiny' Using 'CircleType.js' |
| circlize | Circular Visualization |
| CircMLE | Maximum Likelihood Analysis of Circular Data |
| CircNNTSR | Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models |
| CircNNTSRmult | Multivariate Circular Data using MNNTS Models |
| CircOutlier | Detection of Outliers in Circular-Circular Regression |
| CircSpaceTime | Spatial and Spatio-Temporal Bayesian Model for Circular Data |
| CircStats | Circular Statistics, from "Topics in Circular Statistics" (2001) |
| circular | Circular Statistics |
| CircularDDM | Circular Drift-Diffusion Model |
| circularEV | Extreme Value Analysis for Circular Data |
| CircularSilhouette | Fast Silhouette on Circular or Linear Data Clusters |
| circumplex | Analysis and Visualization of Circular Data |
| cirls | Constrained Iteratively Reweighted Least Squares |
| cIRT | Choice Item Response Theory |
| CIS.DGLM | Covariates, Interaction, and Selection for DGLM |
| cit | Causal Inference Test |
| CITAN | CITation ANalysis Toolpack |
| citation | Software Citation Tools |
| citationchaser | Perform Forward and Backwards Chasing in Evidence Syntheses |
| citecorp | Client for the Open Citations Corpus |
| cities | Clinical Trials with Intercurrent Events Simulator |
| CITMIC | Estimation of Cell Infiltration Based on Cell Crosstalk |
| citmre | Colombian Index Tool Market Rate Exchange |
| cito | Building and Training Neural Networks |
| ciTools | Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models |
| citrus | Customer Intelligence Tool for Rapid Understandable Segmentation |
| ciu | Contextual Importance and Utility |
| ciuupi | Confidence Intervals Utilizing Uncertain Prior Information |
| ciuupi2 | Kabaila and Giri (2009) Confidence Interval |
| civ | Categorical Instrumental Variables |
| civis | R Client for the 'Civis Platform API' |
| ciw | Watch the CRAN Incoming Directories |
| CJAMP | Copula-Based Joint Analysis of Multiple Phenotypes |
| cjar | R Client for 'Customer Journey Analytics' ('CJA') API |
| cjbart | Heterogeneous Effects Analysis of Conjoint Experiments |
| CJIVE | Canonical Joint and Individual Variation Explained (CJIVE) |
| cjoint | AMCE Estimator for Conjoint Experiments |
| ckanr | Client for the Comprehensive Knowledge Archive Network ('CKAN') API |
| CKAT | Composite Kernel Association Test for Pharmacogenetics Studies |
| CKLRT | Composite Kernel Machine Regression Based on Likelihood Ratio Test |
| Ckmeans.1d.dp | Optimal, Fast, and Reproducible Univariate Clustering |
| CKMRpop | Forward-in-Time Simulation and Tallying of Pairwise Relationships |
| CLA | Critical Line Algorithm in Pure R |
| Claddis | Measuring Morphological Diversity and Evolutionary Tempo |
| cladoRcpp | C++ Implementations of Phylogenetic Cladogenesis Calculations |
| ClaimsProblems | Analysis of Conflicting Claims |
| clam | Classical Age-Depth Modelling of Cores from Deposits |
| ClamR | Time Series Modeling for Climate Change Proxies |
| clap | Detecting Class Overlapping Regions in Multidimensional Data |
| clarabel | Interior Point Conic Optimization Solver |
| clarifai | Access to Clarifai API |
| clarify | Simulation-Based Inference for Regression Models |
| clarkeTest | Distribution-Free Tests of Non-Nested Models |
| class | Functions for Classification |
| ClassComparison | Classes and Methods for "Class Comparison" Problems on Microarrays |
| ClassDiscovery | Classes and Methods for "Class Discovery" with Microarrays or Proteomics |
| classGraph | Construct Graphs of S4 Class Hierarchies |
| classifierplots | Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots |
| classifly | Explore Classification Models in High Dimensions |
| classInt | Choose Univariate Class Intervals |
| classmap | Visualizing Classification Results |
| CLAST | Exact Confidence Limits after a Sequential Trial |
| cld2 | Google's Compact Language Detector 2 |
| cld3 | Google's Compact Language Detector 3 |
| clda | Convolution-Based Linear Discriminant Analysis |
| clean | Fast and Easy Data Cleaning |
| CleanBSequences | Curing of Biological Sequences |
| cleancall | C Resource Cleanup via Exit Handlers |
| cleandata | To Inspect and Manipulate Data; and to Keep Track of This Process |
| cleanepi | Clean and Standardize Epidemiological Data |
| cleaner | Fast and Easy Data Cleaning |
| cleangeo | Cleaning Geometries from Spatial Objects |
| CleaningValidation | Cleaning Validation Functions for Pharmaceutical Cleaning Process |
| cleanNLP | A Tidy Data Model for Natural Language Processing |
| cleanr | Helps You to Code Cleaner |
| cleanrmd | Clean Class-Less 'R Markdown' HTML Documents |
| cleanTS | Testbench for Univariate Time Series Cleaning |
| cleaR | Clean the R Console and Environment |
| clespr | Composite Likelihood Estimation for Spatial Data |
| clevr | Clustering and Link Prediction Evaluation in R |
| clhs | Conditioned Latin Hypercube Sampling |
| cli | Helpers for Developing Command Line Interfaces |
| cliapp | Create Rich Command Line Applications |
| clickableImageMap | Implement 'tableGrob' Object as a Clickable Image Map |
| clickb | Web Data Analysis by Bayesian Mixture of Markov Models |
| ClickClust | Model-Based Clustering of Categorical Sequences |
| ClickClustCont | Mixtures of Continuous Time Markov Models |
| ClickHouseHTTP | A Simple HTTP Database Interface to 'ClickHouse' |
| clickR | Semi-Automatic Preprocessing of Messy Data with Change Tracking for Dataset Cleaning |
| clickstream | Analyzes Clickstreams Based on Markov Chains |
| clidamonger | Monthly Climate Data for Germany, Usable for Heating and Cooling Calculations |
| clidatajp | Data from Japan Meteorological Agency |
| cliff | Execute Command Line Programs Interactively |
| clifford | Arbitrary Dimensional Clifford Algebras |
| clifro | Easily Download and Visualise Climate Data from CliFlo |
| CliftLRD | Complex-Valued Wavelet Lifting Estimators of the Hurst Exponent for Irregularly Sampled Time Series |
| clikcorr | Censoring Data and Likelihood-Based Correlation Estimation |
| climaemet | Climate AEMET Tools |
| climateStability | Estimating Climate Stability from Climate Model Data |
| climatol | Climate Tools (Series Homogenization and Derived Products) |
| climatrends | Climate Variability Indices for Ecological Modelling |
| ClimClass | Climate Classification According to Several Indices |
| CLimd | Generating Rainfall Rasters from IMD NetCDF Data |
| clime | Constrained L1-Minimization for Inverse (Covariance) Matrix Estimation |
| climetrics | Climate Change Metrics |
| climextRemes | Tools for Analyzing Climate Extremes |
| ClimInd | Climate Indices |
| ClimMobTools | API Client for the 'ClimMob' Platform |
| ClimProjDiags | Set of Tools to Compute Various Climate Indices |
| climwin | Climate Window Analysis |
| clinDataReview | Clinical Data Review Tool |
| clinDR | Simulation and Analysis Tools for Clinical Dose Response Modeling |
| clinfun | Clinical Trial Design and Data Analysis Functions |
| clinicalomicsdbR | Interface with the 'ClinicalOmicsDB' API, Allowing for Easy Data Downloading and Importing |
| clinicalsignificance | A Toolbox for Clinical Significance Analyses in Intervention Studies |
| ClinicalTrialSummary | Summary Measures for Clinical Trials with Survival Outcomes |
| ClinicalUtilityRecal | Recalibration Methods for Improved Clinical Utility of Risk Scores |
| clinmon | Hemodynamic Calculations from Clinical Monitoring |
| clinPK | Clinical Pharmacokinetics Toolkit |
| clinsig | Clinical Significance Functions |
| ClinSigMeasures | Clinical Significance Measures |
| clinspacy | Clinical Natural Language Processing using 'spaCy', 'scispaCy', and 'medspaCy' |
| clintools | Tools for Clinical Research |
| clintrialx | Connect and Work with Clinical Trials Data Sources |
| clinUtils | General Utility Functions for Analysis of Clinical Data |
| cliot | Clinical Indices and Outcomes Tools |
| clipp | Calculating Likelihoods by Pedigree Paring |
| clipr | Read and Write from the System Clipboard |
| CliquePercolation | Clique Percolation for Networks |
| clisymbols | Unicode Symbols at the R Prompt |
| CLME | Constrained Inference for Linear Mixed Effects Models |
| clmplus | Tool-Box of Chain Ladder Plus Models |
| clock | Date-Time Types and Tools |
| clockify | A Wrapper for the 'Clockify' API |
| clogitboost | Boosting Conditional Logit Model |
| clogitL1 | Fitting Exact Conditional Logistic Regression with Lasso and Elastic Net Penalties |
| clogitLasso | Sparse Conditional Logistic Regression for Matched Studies |
| cloneRate | Estimate Growth Rates from Phylogenetic Trees |
| CloneSeeker | Seeking and Finding Clones in Copy Number and Sequencing Data |
| CLONETv2 | Clonality Estimates in Tumor |
| clordr | Composite Likelihood Inference and Diagnostics for Replicated Spatial Ordinal Data |
| closeloop | Integrate Single-Arm Observational Data in Network Meta Analysis |
| cloudfs | Streamlined Interface to Interact with Cloud Storage Platforms |
| cloudml | Interface to the Google Cloud Machine Learning Platform |
| cloudos | R Client Library for CloudOS |
| cloudstoR | Simplifies Access to Cloudstor API |
| cloudUtil | Cloud Utilization Plots |
| clptheory | Compute Price of Production and Labor Values |
| clr | Curve Linear Regression via Dimension Reduction |
| clrng | Parallel Random Number Generation on GPU |
| CLSIEP15 | Clinical and Laboratory Standards Institute (CLSI) EP15-A3 Calculations |
| clttools | Central Limit Theorem Experiments (Theoretical and Simulation) |
| clubpro | Classification Using Binary Procrustes Rotation |
| clubSandwich | Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections |
| clue | Cluster Ensembles |
| ClueR | Cluster Evaluation |
| clugenr | Multidimensional Cluster Generation Using Support Lines |
| CluMP | Clustering of Micro Panel Data |
| ClusBoot | Bootstrap a Clustering Solution to Establish the Stability of the Clusters |
| cluscov | Clustered Covariate Regression |
| clusEvol | A Procedure for Cluster Evolution Analytics |
| ClusPred | Simultaneous Semi-Parametric Estimation of Clustering and Regression |
| clusrank | Wilcoxon Rank Tests for Clustered Data |
| ClusROC | ROC Analysis in Three-Class Classification Problems for Clustered Data |
| ClussCluster | Simultaneous Detection of Clusters and Cluster-Specific Genes in High-Throughput Transcriptome Data |
| clust.bin.pair | Statistical Methods for Analyzing Clustered Matched Pair Data |
| clustAnalytics | Cluster Evaluation on Graphs |
| ClustAssess | Tools for Assessing Clustering |
| ClustBlock | Clustering of Datasets |
| ClusTCR2 | Identifying Similar T Cell Receptor Hyper-Variable Sequences with 'ClusTCR2' |
| clustEff | Clusters of Effects Curves in Quantile Regression Models |
| cluster | "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. |
| cluster.datasets | Cluster Analysis Data Sets |
| Cluster.OBeu | Cluster Analysis 'OpenBudgets.eu' |
| clusterability | Performs Tests for Cluster Tendency of a Data Set |
| ClusterBootstrap | Analyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap |
| clusterCons | Consensus Clustering using Multiple Algorithms and Parameters |
| clusterCrit | Clustering Indices |
| ClusteredMutations | Location and Visualization of Clustered Somatic Mutations |
| clusterGeneration | Random Cluster Generation (with Specified Degree of Separation) |
| clusterhap | Clustering Genotypes in Haplotypes |
| clusterHD | Tools for Clustering High-Dimensional Data |
| Clustering | Techniques for Evaluating Clustering |
| clustering.sc.dp | Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint |
| clusterMI | Cluster Analysis with Missing Values by Multiple Imputation |
| clustermole | Unbiased Single-Cell Transcriptomic Data Cell Type Identification |
| clustermq | Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque) |
| clusternomics | Integrative Clustering for Heterogeneous Biomedical Datasets |
| ClusterR | Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering |
| ClusterRankTest | Rank Tests for Clustered Data |
| clusterRepro | Reproducibility of Gene Expression Clusters |
| clusterSEs | Calculate Cluster-Robust p-Values and Confidence Intervals |
| clusterSim | Searching for Optimal Clustering Procedure for a Data Set |
| ClusterStability | Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions |
| clustertend | Check the Clustering Tendency |
| ClusterVAR | Fitting Latent Class Vector-Autoregressive (VAR) Models |
| ClustGeo | Hierarchical Clustering with Spatial Constraints |
| ClustImpute | K-Means Clustering with Build-in Missing Data Imputation |
| clustlearn | Learn Clustering Techniques Through Examples and Code |
| ClustMC | Cluster-Based Multiple Comparisons |
| clustMD | Model Based Clustering for Mixed Data |
| clustMixType | k-Prototypes Clustering for Mixed Variable-Type Data |
| clustNet | Network-Based Clustering |
| ClustOfVar | Clustering of Variables |
| ClusTorus | Prediction and Clustering on the Torus by Conformal Prediction |
| clustra | Clustering Longitudinal Trajectories |
| clusTransition | Monitor Changes in Cluster Solutions of Dynamic Datasets |
| clustrd | Methods for Joint Dimension Reduction and Clustering |
| clustree | Visualise Clusterings at Different Resolutions |
| clustringr | Cluster Strings by Edit-Distance |
| CLUSTShiny | Interactive Document for Working with Cluster Analysis |
| ClustVarLV | Clustering of Variables Around Latent Variables |
| clustvarsel | Variable Selection for Gaussian Model-Based Clustering |
| ClusVis | Gaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering |
| clv | Cluster Validation Techniques |
| clValid | Validation of Clustering Results |
| CLVTools | Tools for Customer Lifetime Value Estimation |
| cmaes | Covariance Matrix Adapting Evolutionary Strategy |
| cmaesr | Covariance Matrix Adaptation Evolution Strategy |
| cmahalanobis | Calculate Distance Measures for a Given List of Data Frames with Factors |
| CMAPSS | Commercial Modular Aero-Propulsion System Simulation Data Set |
| CMapViz | Representation Tool For Output Of Connectivity Map (CMap) Analysis |
| cmaRs | Implementation of the Conic Multivariate Adaptive Regression Splines in R |
| cmbClust | Conditional Mixture Modeling and Model-Based Clustering |
| cmce | Computer Model Calibration for Deterministic and Stochastic Simulators |
| cmcR | An Implementation of the 'Congruent Matching Cells' Method |
| cmdfun | Framework for Building Interfaces to Shell Commands |
| cmenet | Bi-Level Selection of Conditional Main Effects |
| CMF | Collective Matrix Factorization |
| cmfrec | Collective Matrix Factorization for Recommender Systems |
| CMFsurrogate | Calibrated Model Fusion Approach to Combine Surrogate Markers |
| CMGFM | Covariate-Augumented Generalized Factor Model |
| cmhc | Access, Retrieve, and Work with CMHC Data |
| CMHNPA | Cochran-Mantel-Haenszel and Nonparametric ANOVA |
| cml | Conditional Manifold Learning |
| CMLS | Constrained Multivariate Least Squares |
| cmm | Categorical Marginal Models |
| cmmr | CEU Mass Mediator RESTful API |
| CMMs | Compositional Mediation Model |
| cmna | Computational Methods for Numerical Analysis |
| cmocean | Beautiful Colour Maps for Oceanography |
| CMplot | Circle Manhattan Plot |
| cmprsk | Subdistribution Analysis of Competing Risks |
| cmprskcoxmsm | Use IPW to Estimate Treatment Effect under Competing Risks |
| cmprskQR | Analysis of Competing Risks Using Quantile Regressions |
| cmpsR | R Implementation of Congruent Matching Profile Segments Method |
| cmR | Analysis of Cardiac Magnetic Resonance Images |
| cmrutils | Misc Functions of the Center for Mathematical Research |
| cms | Calculate Medicare Reimbursement |
| cmsaf | A Toolbox for CM SAF NetCDF Data |
| cmsafops | Tools for CM SAF NetCDF Data |
| cmsafvis | Tools to Visualize CM SAF NetCDF Data |
| CMShiny | Interactive Document for Working with Confusion Matrix |
| cmstatr | Statistical Methods for Composite Material Data |
| cmstatrExt | More Statistical Methods for Composite Material Data |
| cmtest | Conditional Moments Test |
| cmvnorm | The Complex Multivariate Gaussian Distribution |
| cna | Causal Modeling with Coincidence Analysis |
| CNAIM | Common Network Asset Indices Methodology (CNAIM) |
| cnaOpt | Optimizing Consistency and Coverage in Configurational Causal Modeling |
| cnbdistr | Conditional Negative Binomial Distribution |
| cncaGUI | Canonical Non-Symmetrical Correspondence Analysis in R |
| CNID | Get Basic Information from Chinese ID Number |
| CNLTreg | Complex-Valued Wavelet Lifting for Signal Denoising |
| CNLTtsa | Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis |
| cnmap | China Map Data from AutoNavi Map |
| cNORM | Continuous Norming |
| CNprep | Pre-Process DNA Copy Number (CN) Data for Detection of CN Events |
| CNPS | Nonparametric Statistics |
| cnum | Chinese Numerals Processing |
| CNVRG | Dirichlet Multinomial Modeling of Relative Abundance Data |
| CNVScope | A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization |
| coala | A Framework for Coalescent Simulation |
| coalescentMCMC | MCMC Algorithms for the Coalescent |
| COAP | High-Dimensional Covariate-Augmented Overdispersed Poisson Factor Model |
| coarseDataTools | Analysis of Coarsely Observed Data |
| CoastlineFD | Calculation of the Fractal Dimension of a Coastline |
| coat | Conditional Method Agreement Trees (COAT) |
| cobalt | Covariate Balance Tables and Plots |
| cobiclust | Biclustering via Latent Block Model Adapted to Overdispersed Count Data |
| cobs | Constrained B-Splines (Sparse Matrix Based) |
| coca | Cluster-of-Clusters Analysis |
| cocktailApp | 'shiny' App to Discover Cocktails |
| CoClust | Copula Based Cluster Analysis |
| coconots | Convolution-Closed Models for Count Time Series |
| cocons | Covariate-Based Covariance Functions for Nonstationary Spatial Modeling |
| COCONUT | COmbat CO-Normalization Using conTrols (COCONUT) |
| cocor | Comparing Correlations |
| cocorresp | Co-Correspondence Analysis Methods |
| cocosoR | CoCoSo - Combined Compromise Solution Method for MCDA |
| cocotest | Dependence Condition Test Using Ranked Correlation Coefficients |
| cocron | Statistical Comparisons of Two or more Alpha Coefficients |
| coda | Output Analysis and Diagnostics for MCMC |
| coda.base | A Basic Set of Functions for Compositional Data Analysis |
| coda4microbiome | Compositional Data Analysis for Microbiome Studies |
| codacore | Learning Sparse Log-Ratios for Compositional Data |
| CoDaImpact | Interpreting CoDa Regression Models |
| codalm | Transformation-Free Linear Regression for Compositional Outcomes and Predictors |
| codaredistlm | Compositional Data Linear Models with Composition Redistribution |
| CodataGS | Genomic Prediction Using SNP Codata |
| cOde | Automated C Code Generation for 'deSolve', 'bvpSolve' |
| codebook | Automatic Codebooks from Metadata Encoded in Dataset Attributes |
| codebookr | Create Codebooks from Data Frames |
| codebreaker | Retro Logic Game |
| codeCollection | Collection of Codes with Labels |
| codecountR | Counting Codes in a Text and Preparing Data for Analysis |
| CodeDepends | Analysis of R Code for Reproducible Research and Code Comprehension |
| CodelistGenerator | Identify Relevant Clinical Codes and Evaluate Their Use |
| codemeta | A Smaller 'codemetar' Package |
| codemetar | Generate 'CodeMeta' Metadata for R Packages |
| codename | Generation of Code Names for Organizations, People, Projects, and Whatever Else |
| codep | Multiscale Codependence Analysis |
| coder | Deterministic Categorization of Items Based on External Code Data |
| codetools | Code Analysis Tools for R |
| codewhere | Find the Location of an R Package's Code |
| codexcopd | The CODEX (Comorbidity, Obstruction, Dyspnea, and Previous Severe Exacerbations) Index: Short and Medium-Term Prognosis in Patients Hospitalized for Chronic Obstructive Pulmonary Disease (COPD) Exacerbations |
| codez | Seq2Seq Encoder-Decoder Model for Time-Feature Analysis Based on Tensorflow |
| codified | Produce Standard/Formalized Demographics Tables |
| CoDiNA | Co-Expression Differential Network Analysis |
| codingMatrices | Alternative Factor Coding Matrices for Linear Model Formulae |
| codyn | Community Dynamics Metrics |
| coefa | Meta Analysis of Factor Analysis Based on CO-Occurrence Matrices |
| coefficientalpha | Robust Coefficient Alpha and Omega with Missing and Non-Normal Data |
| coefplot | Plots Coefficients from Fitted Models |
| coenocliner | Coenocline Simulation |
| coenoflex | Gradient-Based Coenospace Vegetation Simulator |
| cofad | Contrast Analyses for Factorial Designs |
| cofeatureR | Generate Cofeature Matrices |
| coffee | Chronological Ordering for Fossils and Environmental Events |
| cofid | Copepod Fish Interaction Database |
| CoFRA | Complete Functional Regulation Analysis |
| coga | Convolution of Gamma Distributions |
| coglasso | Collaborative Graphical Lasso - Multi-Omics Network Reconstruction |
| cogmapr | Cognitive Mapping Tools Based on Coding of Textual Sources |
| cognitoR | Authentication for 'Shiny' Apps with 'Amazon Cognito' |
| CohensdpLibrary | Cohen's D_p Computation with Confidence Intervals |
| CohortAlgebra | Use of Interval Algebra to Create New Cohort(s) from Existing Cohorts |
| cohortBuilder | Data Source Agnostic Filtering Tools |
| CohortCharacteristics | Summarise and Visualise Characteristics of Patients in the OMOP CDM |
| CohortConstructor | Build and Manipulate Study Cohorts Using a Common Data Model |
| CohortExplorer | Explorer of Profiles of Patients in a Cohort |
| CohortGenerator | Cohort Generation for the OMOP Common Data Model |
| CohortPlat | Simulation of Cohort Platform Trials for Combination Treatments |
| cohorts | Cohort Analysis Made Easy |
| CohortSurvival | Estimate Survival from Common Data Model Cohorts |
| CohortSymmetry | Sequence Symmetry Analysis Using the Observational Medical Outcomes Partnership Common Data Model |
| cohorttools | Cohort Data Analyses |
| coil | Contextualization and Evaluation of COI-5P Barcode Data |
| CoImp | Parametric and Non-Parametric Copula-Based Imputation Methods |
| coin | Conditional Inference Procedures in a Permutation Test Framework |
| coinmarketcapr | Get 'Cryptocurrencies' Market Cap Prices from Coin Market Cap |
| Coinprofile | Coincident Profile |
| COINr | Composite Indicator Construction and Analysis |
| cointmonitoR | Consistent Monitoring of Stationarity and Cointegrating Relationships |
| cointReg | Parameter Estimation and Inference in a Cointegrating Regression |
| cold | Count Longitudinal Data |
| colf | Constrained Optimization on Linear Function |
| collapse | Advanced and Fast Data Transformation |
| CollapseLevels | Collapses Levels, Computes Information Value and WoE |
| collapsibleTree | Interactive Collapsible Tree Diagrams using 'D3.js' |
| collateral | Quickly Evaluate Captured Side Effects |
| collatz | Functions Related to the Collatz/Syracuse/3n+1 Problem |
| collections | High Performance Container Data Types |
| collegeScorecard | US College Scorecard Data |
| collidr | Check for Namespace Collisions Across Packages and Functions on CRAN |
| collin | Visualization the Effects of Collinearity in Distributed Lag Models and Other Linear Models |
| collinear | Seamless Multicollinearity Management |
| CollocInfer | Collocation Inference for Dynamic Systems |
| collpcm | Collapsed Latent Position Cluster Model for Social Networks |
| collUtils | Auxiliary Package for Package 'CollapsABEL' |
| colmozzie | Dengue Cases and Climate Variables in Colombo Sri Lanka |
| coloc | Colocalisation Tests of Two Genetic Traits |
| colocalization | Normalized Spatial Intensity Correlation |
| colocalized | Clusters of Colocalized Sequences |
| colocPropTest | Proportional Testing for Colocalisation Analysis |
| colocr | Conduct Co-Localization Analysis of Fluorescence Microscopy Images |
| ColOpenData | Download Colombian Demographic, Climate and Geospatial Data |
| colorblindcheck | Check Color Palettes for Problems with Color Vision Deficiency |
| colorBlindness | Safe Color Set for Color Blindness |
| colorDF | Colorful Data Frames in R Terminal |
| colordistance | Distance Metrics for Image Color Similarity |
| colorednoise | Simulate Temporally Autocorrelated Populations |
| colorfindr | Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images |
| colorhcplot | Colorful Hierarchical Clustering Dendrograms |
| colorist | Coloring Wildlife Distributions in Space-Time |
| colorizer | Colorize Old Images Using the 'DeOldify' Image Colorization API |
| colormap | Color Palettes using Colormaps Node Module |
| ColorNameR | Give Colors a Name |
| colorpatch | Optimized Rendering of Fold Changes and Confidence Values |
| colorplane | Basic S4 Classes and Methods for Mapping Between Numeric Values and Colors |
| colorr | Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams |
| colorRamp2 | Generate Color Mapping Functions |
| colorRamps | Builds Color Tables |
| colorrepel | Repel Visually Similar Colors for Colorblind Users in Various Plots |
| colors3d | Generate 2D and 3D Color Palettes |
| colorscience | Color Science Methods and Data |
| colorsGen | Generation of Random Colors |
| colorspace | A Toolbox for Manipulating and Assessing Colors and Palettes |
| colorSpec | Color Calculations with Emphasis on Spectral Data |
| colouR | Create Colour Palettes from Images |
| colourlovers | R Client for the COLOURlovers API |
| colourpicker | A Colour Picker Tool for Shiny and for Selecting Colours in Plots |
| colourvalues | Assigns Colours to Values |
| colourvision | Colour Vision Models |
| COLP | Causal Discovery for Categorical Data with Label Permutation |
| cols | Constrained Ordinary Least Squares |
| cols4all | Colors for all |
| colt | Command-Line Color Themes |
| comat | Creates Co-Occurrence Matrices of Spatial Data |
| comato | Analysis of Concept Maps and Concept Landscapes |
| COMBAT | A Combined Association Test for Genes using Summary Statistics |
| combat.enigma | Fit and Apply ComBat Harmonization for ENIGMA |
| combinat | combinatorics utilities |
| combinationpvalues | Combination of Independent P-Values |
| combinatorics | Introduction to Some Combinatorial Relations |
| combinedevents | Calculate Scores and Marks for Track and Field Combined Events |
| CombinePortfolio | Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies |
| combinIT | A Combined Interaction Test for Unreplicated Two-Way Tables |
| CombinS | Construction Methods of some Series of PBIB Designs |
| combiroc | Selection and Ranking of Omics Biomarkers Combinations Made Easy |
| combiter | Combinatorics Iterators |
| COMBO | Correcting Misclassified Binary Outcomes in Association Studies |
| comclim | Community Climate Statistics |
| cometExactTest | Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm |
| cometr | 'Comet' API for R |
| comets | Covariance Measure Tests for Conditional Independence |
| comf | Models and Equations for Human Comfort Research |
| comFuncs | Commonly Used Functions for R Shiny Applications |
| ComICS | Computational Methods for Immune Cell-Type Subsets |
| CoMiRe | Convex Mixture Regression |
| COMIX | Coarsened Mixtures of Hierarchical Skew Kernels |
| COMMA | Correcting Misclassified Mediation Analysis |
| commafree | Call Functions Without Commas Between Arguments |
| CommEcol | Community Ecology Analyses |
| CommKern | Network-Based Communities and Kernel Machine Methods |
| common | Solutions for Common Problems in Base R |
| CommonDataModel | OMOP CDM DDL and Documentation Generator |
| CommonJavaJars | Useful Libraries for Building a Java Based GUI under R |
| commonmark | High Performance CommonMark and Github Markdown Rendering in R |
| CommonMean.Copula | Common Mean Vector under Copula Models |
| commonsMath | JAR Files of the Apache Commons Mathematics Library |
| communication | Feature Extraction and Model Estimation for Audio of Human Speech |
| comorbidity | Computing Comorbidity Scores |
| comorbidPGS | Assessing Predisposition Between Phenotypes using Polygenic Scores |
| comorosmaps | Comoro Islands Maps |
| Comp2ROC | Compare Two ROC Curves that Intersect |
| comparator | Comparison Functions for Clustering and Record Linkage |
| compare | Comparing Objects for Differences |
| compareC | Compare Two Correlated C Indices with Right-Censored Survival Outcome |
| CompareCausalNetworks | Interface to Diverse Estimation Methods of Causal Networks |
| CompAREdesign | Statistical Functions for the Design of Studies with Composite Endpoints |
| compareDF | Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure |
| compareGroups | Descriptive Analysis by Groups |
| compareMCMCs | Compare MCMC Efficiency from 'nimble' and/or Other MCMC Engines |
| CompareMultipleModels | Finding the Best Model Using Eight Metrics Values |
| comparer | Compare Output and Run Time |
| CompareTests | Correct for Verification Bias in Diagnostic Accuracy & Agreement |
| comparison | Multivariate Likelihood Ratio Calculation and Evaluation |
| ComparisonSurv | Comparison of Survival Curves Between Two Groups |
| compas | Conformational Manipulations of Protein Atomic Structures |
| CompDist | Multisection Composite Distributions |
| comperank | Ranking Methods for Competition Results |
| comperes | Manage Competition Results |
| competitiontoolbox | A Graphical User Interface for Antitrust and Trade Practitioners |
| CompExpDes | Computer Experiment Designs |
| CompGR | Complete Annual Growth Rate Generator |
| compHclust | Complementary Hierarchical Clustering |
| Compind | Composite Indicators Functions |
| compindexR | Calculates Composite Index |
| compindPCA | Computation of Relative Weights of Variables and Composite Index Values Based on PCA |
| completejourney | Retail Shopping Data |
| complex | Time Series Analysis and Forecasting Using Complex Variables |
| complexity | Calculate the Proportion of Permutations in Line with an Informative Hypothesis |
| complexlm | Linear Fitting for Complex Valued Data |
| complexNet | Complex Network Generation |
| complexplus | Functions of Complex or Real Variable |
| ComplexUpset | Create Complex UpSet Plots Using 'ggplot2' Components |
| complmrob | Robust Linear Regression with Compositional Data as Covariates |
| CompMix | A Comprehensive Toolkit for Environmental Mixtures Analysis ('CompMix') |
| CompModels | Pseudo Computer Models for Optimization |
| COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |
| CompositeReliability | Determine the Composite Reliability of a Naturalistic, Unbalanced Dataset |
| compositeReliabilityInNestedDesigns | Optimizing the Composite Reliability in Multivariate Nested Designs |
| Compositional | Compositional Data Analysis |
| CompositionalML | Machine Learning with Compositional Data |
| CompositionalRF | Multivariate Random Forest with Compositional Responses |
| compositions | Compositional Data Analysis |
| compound.Cox | Univariate Feature Selection and Compound Covariate for Predicting Survival, Including Copula-Based Analyses for Dependent Censoring |
| CompoundEvents | Statistical Modeling of Compound Events |
| CompPareto | Discrete Composite Distributions with Pareto Tails |
| CompQuadForm | Distribution Function of Quadratic Forms in Normal Variables |
| CompR | Paired Comparison Data Analysis |
| comprehenr | List Comprehensions |
| compute.es | Compute Effect Sizes |
| ComradesM | The Comrades Marathon 1921 to 2019 |
| ComRiskModel | Fitting of Complementary Risk Models |
| comsimitv | Flexible Framework for Simulating Community Assembly |
| comstab | Partitioning the Drivers of Stability of Ecological Communities |
| comtradr | Interface with the United Nations Comtrade API |
| con2aqi | Calculate the AQI from Pollutant Concentration |
| con2lki | Calculate the Dutch Air Quality Index (LKI) |
| Conake | Continuous Associated Kernel Estimation |
| concatenate | Human-Friendly Text from Unknown Strings |
| concatipede | Easy Concatenation of Fasta Sequences |
| concaveman | A Very Fast 2D Concave Hull Algorithm |
| conclust | Pairwise Constraints Clustering |
| concom | Connected Components of an Undirected Graph |
| ConconiAnaerobicThresholdTest | Conconi Estimate of Anaerobic Threshold from a TCX File |
| ConConPiWiFun | Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |
| concordance | Product Concordance |
| ConcordanceTest | An Alternative to the Kruskal-Wallis Based on the Kendall Tau Distance |
| concorR | CONCOR and Supplemental Functions |
| concstats | Market Structure, Concentration and Inequality Measures |
| CONCUR | Copy Number Profile Curve-Based Association Test |
| cond | Approximate Conditional Inference for Logistic and Loglinear Models |
| CondCopulas | Estimation and Inference for Conditional Copula Models |
| condensr | Academic Group Website Generator |
| condformat | Conditional Formatting in Data Frames |
| condGEE | Parameter Estimation in Conditional GEE for Recurrent Event Gap Times |
| CondIndTests | Nonlinear Conditional Independence Tests |
| condir | Computation of P Values and Bayes Factors for Conditioning Data |
| CondiS | Censored Data Imputation for Direct Modeling |
| conditionalProbNspades | Conditional Probabilities of Distributions Across Hearts Hands |
| conditionz | Control How Many Times Conditions are Thrown |
| condMVNorm | Conditional Multivariate Normal Distribution |
| CondMVT | Conditional Multivariate t Distribution, Expectation Maximization Algorithm, and Its Stochastic Variants |
| condor | Interact with 'Condor' from R via SSH |
| condorOptions | Trading Condor Options Strategies |
| condSURV | Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data |
| condTruncMVN | Conditional Truncated Multivariate Normal Distribution |
| conductor | Create Tours in 'Shiny' Apps Using 'Shepherd.js' |
| condvis | Conditional Visualization for Statistical Models |
| condvis2 | Interactive Conditional Visualization for Supervised and Unsupervised Models in Shiny |
| coneproj | Primal or Dual Cone Projections with Routines for Constrained Regression |
| conf | Visualization and Analysis of Statistical Measures of Confidence |
| conf.design | Construction of factorial designs |
| confcons | Confidence and Consistency of Predictive Distribution Models |
| confidence | Confidence Estimation of Environmental State Classifications |
| ConfidenceEllipse | Computation of 2D and 3D Elliptical Joint Confidence Regions |
| config | Manage Environment Specific Configuration Values |
| ConfigParser | Package to Parse an INI File, Including Variable Interpolation |
| configr | An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML) |
| configural | Multivariate Profile Analysis |
| confinterpret | Descriptive Interpretations of Confidence Intervals |
| confintr | Confidence Intervals |
| confintROB | Confidence Intervals for Robust and Classical Linear Mixed Model Estimators |
| ConfIntVariance | Confidence Interval for the Univariate Population Variance without Normality Assumption |
| conflicted | An Alternative Conflict Resolution Strategy |
| conflr | Client for 'Confluence' API |
| conformalbayes | Jackknife(+) Predictive Intervals for Bayesian Models |
| conformalClassification | Transductive and Inductive Conformal Predictions for Classification Problems |
| conformalInference.fd | Tools for Conformal Inference for Regression in Multivariate Functional Setting |
| conformalInference.multi | Conformal Inference Tools for Regression with Multivariate Response |
| conformalpvalue | Computes Conformal p-Values |
| ConformalSmallest | Efficient Tuning-Free Conformal Prediction |
| confreq | Configural Frequencies Analysis Using Log-Linear Modeling |
| confSAM | Estimates and Bounds for the False Discovery Proportion, by Permutation |
| ConfusionTableR | Confusion Matrix Toolset |
| ConfZIC | Confidence Envelopes for Model Selection Criteria Based on Minimum ZIC |
| congress | Access the Congress.gov API |
| CongressData | A Functional Tool for 'CongressData' |
| CongreveLamsdell2016 | Distance Metrics for Trees Generated by Congreve and Lamsdell |
| CoNI | Correlation Guided Network Integration (CoNI) |
| conicfit | Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov |
| Conigrave | Flexible Tools for Multiple Imputation |
| conjoint | An Implementation of Conjoint Analysis Method |
| conjurer | A Parametric Method for Generating Synthetic Data |
| conleyreg | Estimations using Conley Standard Errors |
| conmet | Construct Measurement Evaluation Tool |
| ConNEcT | Contingency Measure-Based Networks for Binary Time Series |
| connectapi | Utilities for Interacting with the 'Posit Connect' Server API |
| ConnectednessApproach | Connectedness Approach |
| connections | Integrates with the 'RStudio' Connections Pane and 'pins' |
| connectoModa | Download Data from Moda |
| connectwidgets | Organize and Curate Your Content Within 'Posit Connect' |
| ConnMatTools | Tools for Working with Connectivity Data |
| conogive | Congeneric Normal-Ogive Model |
| conos | Clustering on Network of Samples |
| conover.test | Conover-Iman Test of Multiple Comparisons Using Rank Sums |
| conquer | Convolution-Type Smoothed Quantile Regression |
| conquestr | An R Package to Extend 'ACER ConQuest' |
| conrad | Client for the Microsoft's 'Cognitive Services Text to Speech REST' API |
| ConsensusClustering | Consensus Clustering |
| ConsensusOPLS | Consensus OPLS for Multi-Block Data Fusion |
| conserveR | Identifying Conservation Prioritization Methods Based on Data Availability |
| consibiocloudclient | A Client for the 'Consibio Cloud' API |
| consolechoice | An Easy and Quick Way to Loop a Character Vector as a Menu in the Console |
| consort | Create Consort Diagram |
| consortr | Interactive Consort Flow Diagrams |
| ConSpline | Partial Linear Least-Squares Regression using Constrained Splines |
| ConsRank | Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach |
| ConsRankClass | Classification and Clustering of Preference Rankings |
| ConsReg | Fits Regression & ARMA Models Subject to Constraints to the Coefficient |
| constants | Reference on Constants, Units and Uncertainty |
| constellation | Identify Event Sequences Using Time Series Joins |
| constrainedKriging | Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging |
| conStruct | Models Spatially Continuous and Discrete Population Genetic Structure |
| constructive | Display Idiomatic Code to Construct Most R Objects |
| contactdata | Social Contact Matrices for 177 Countries |
| container | Extending Base 'R' Lists |
| ContaminatedMixt | Clustering and Classification with the Contaminated Normal |
| contentid | An Interface for Content-Based Identifiers |
| conText | 'a la Carte' on Text (ConText) Embedding Regression |
| contfrac | Continued Fractions |
| contFracR | Continued Fraction Generators and Evaluators |
| contingency | Discrete Multivariate Probability Distributions |
| contingencytables | Statistical Analysis of Contingency Tables |
| contoureR | Contouring of Non-Regular Three-Dimensional Data |
| ContourFunctions | Create Contour Plots from Data or a Function |
| contourPlot | Plots x,y,z Co-Ordinates in a Contour Map |
| contrast | A Collection of Contrast Methods |
| contrastable | Consistent Contrast Coding for Factors |
| conTree | Contrast Trees and Boosting |
| ContRespPP | Predictive Probability for a Continuous Response with an ANOVA Structure |
| contribution | A Tiny Contribution Table Generator Based on 'ggplot2' |
| control | A Control Systems Toolbox |
| controlfunctionIV | Control Function Methods with Possibly Invalid Instrumental Variables |
| controlTest | Quantile Comparison for Two-Sample Right-Censored Survival Data |
| contsurvplot | Visualize the Effect of a Continuous Variable on a Time-to-Event Outcome |
| contTimeCausal | Continuous Time Causal Models |
| convdistr | Convolute Probabilistic Distributions |
| ConvergenceClubs | Finding Convergence Clubs |
| ConvergenceConcepts | Seeing Convergence Concepts in Action |
| convergEU | Monitoring Convergence of EU Countries |
| conversim | Conversation Similarity Analysis |
| convertBCD | Convert Decimal to Binary-Coded Decimal (BCD) Form and Vice Versa |
| convertbonds | Use the Given Parameters to Calculate the European Option Value |
| convertid | Convert Gene IDs Between Each Other and Fetch Annotations from Biomart |
| ConvertPar | Estimating IRT Parameters via Machine Learning Algorithms |
| convertr | Convert Between Units |
| convevol | Analysis of Convergent Evolution |
| convey | Income Concentration Analysis with Complex Survey Samples |
| Convolutioner | Convolution of Data |
| convoSPAT | Convolution-Based Nonstationary Spatial Modeling |
| cooccur | Probabilistic Species Co-Occurrence Analysis in R |
| CooccurrenceAffinity | Affinity in Co-Occurrence Data |
| cookiecutter | Generate Project Files from a Template |
| cookiemonster | Your Friendly Solution to Managing Browser Cookies |
| cookies | Use Browser Cookies with 'shiny' |
| CoOL | Causes of Outcome Learning |
| cooltools | Practical Tools for Scientific Computations and Visualizations |
| coop | Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations |
| CoopGame | Important Concepts of Cooperative Game Theory |
| CoordinateCleaner | Automated Cleaning of Occurrence Records from Biological Collections |
| CooRTweet | Coordinated Networks Detection on Social Media |
| copBasic | General Bivariate Copula Theory and Many Utility Functions |
| copCAR | Fitting the copCAR Regression Model for Discrete Areal Data |
| copcor | Correlates of Protection and Correlates of Risk Functions |
| CopCTS | Copula-Based Semiparametric Analysis for Time Series Data with Detection Limits |
| cope | Coverage Probability Excursion (CoPE) Sets |
| copent | Estimating Copula Entropy and Transfer Entropy |
| CopernicusDEM | Copernicus Digital Elevation Models |
| CopernicusMarine | Search Download and Handle Data from Copernicus Marine Service Information |
| cophescan | Adaptation of the Coloc Method for PheWAS |
| coppeCosenzaR | COPPE-Cosenza Fuzzy Hierarchy Model |
| copre | Tools for Nonparametric Martingale Posterior Sampling |
| cops | Cluster Optimized Proximity Scaling |
| CopSens | Copula-Based Sensitivity Analysis for Observational Causal Inference |
| copula | Multivariate Dependence with Copulas |
| Copula.Markov | Copula-Based Estimation and Statistical Process Control for Serially Correlated Time Series |
| Copula.Markov.survival | Copula Markov Model with Dependent Censoring |
| Copula.surv | Analysis of Bivariate Survival Data Based on Copulas |
| copulaboost | Fitting Additive Copula Regression Models for Binary Outcome Regression |
| CopulaCenR | Copula-Based Regression Models for Multivariate Censored Data |
| copulaData | Data Sets for Copula Modeling |
| copulaedas | Estimation of Distribution Algorithms Based on Copulas |
| CopulaGAMM | Copula-Based Mixed Regression Models |
| CopulaInference | Estimation and Goodness-of-Fit of Copula-Based Models with Arbitrary Distributions |
| copulareg | Copula Regression |
| CopulaREMADA | Copula Mixed Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies |
| copulaSim | Virtual Patient Simulation by Copula Invariance Property |
| copyseparator | Assembling Long Gene Copies from Short Read Data |
| COR | The COR for Optimal Subset Selection in Distributed Estimation |
| cora | Cora Data for Entity Resolution |
| coRanking | Co-Ranking Matrix |
| corazon | Apply 'colorffy' Color Gradients Within 'shiny' Elements |
| Corbi | Collection of Rudimentary Bioinformatics Tools |
| CorBin | Generate High-Dimensional Binary Data with Correlation Structures |
| corbouli | Corbae-Ouliaris Frequency Domain Filtering |
| corclass | Correlational Class Analysis |
| cord | Community Estimation in G-Models via CORD |
| cordillera | Calculation of the OPTICS Cordillera |
| CORE | Cores of Recurrent Events |
| coreCollection | Core Collection |
| coreCT | Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging |
| corehunter | Multi-Purpose Core Subset Selection |
| CORElearn | Classification, Regression and Feature Evaluation |
| corels | R Binding for the 'Certifiably Optimal RulE ListS (Corels)' Learner |
| CoreMicrobiomeR | Identification of Core Microbiome |
| coreNLP | Wrappers Around Stanford CoreNLP Tools |
| coreSim | Core Functionality for Simulating Quantities of Interest from Generalised Linear Models |
| corHMM | Hidden Markov Models of Character Evolution |
| corkscrew | Preprocessor for Data Modeling |
| corlink | Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields |
| CorMID | Correct Mass Isotopologue Distribution Vectors |
| corncob | Count Regression for Correlated Observations with the Beta-Binomial |
| CornerstoneR | Collection of Scripts for Interface Between 'Cornerstone' and 'R' |
| cornet | Penalised Regression for Dichotomised Outcomes |
| coro | 'Coroutines' for R |
| coroICA | Confounding Robust Independent Component Analysis for Noisy and Grouped Data |
| corona | Coronavirus ('Rona') Data Exploration |
| CoronaNetR | API Access to 'CoronaNet' Data |
| coronavirus | The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset |
| corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
| corpmetrics | Tools for Valuation, Financial Metrics and Modeling in Corporate Finance |
| corpora | Statistics and Data Sets for Corpus Frequency Data |
| corporaexplorer | A 'Shiny' App for Exploration of Text Collections |
| CoRpower | Power Calculations for Assessing Correlates of Risk in Clinical Efficacy Trials |
| corpustools | Managing, Querying and Analyzing Tokenized Text |
| corr2D | Implementation of 2D Correlation Analysis in R |
| corrarray | Correlation Arrays and 2-Sample Correlation Matrices |
| CorrBin | Nonparametrics with Clustered Binary and Multinomial Data |
| corrcoverage | Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping |
| corrDNA | Finding Associations in Position-Wise Aligned DNA Sequence Dataset |
| correctedAUC | Correcting AUC for Measurement Error |
| CorrectedFDR | Correcting False Discovery Rates |
| CorrectOverloadedPeaks | Correct Overloaded Peaks from GC-APCI-MS Data |
| correctR | Corrected Test Statistics for Comparing Machine Learning Models on Correlated Samples |
| correlation | Methods for Correlation Analysis |
| correlationfunnel | Speed Up Exploratory Data Analysis (EDA) with the Correlation Funnel |
| correlbinom | Correlated Binomial Probabilities |
| Correlplot | A Collection of Functions for Graphing Correlation Matrices |
| correspondenceTables | Creating Correspondence Tables Between Two Statistical Classifications |
| corrfuns | Correlation Coefficient Related Functions |
| corrgram | Plot a Correlogram |
| corrgrapher | Explore Correlations Between Variables in a Machine Learning Model |
| corrMCT | Correlated Weighted Hochberg |
| corrmeta | Correlated Meta-Analysis |
| CorrMixed | Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models |
| corrplot | Visualization of a Correlation Matrix |
| corrr | Correlations in R |
| corrsieve | Software for Summarising and Evaluating STRUCTURE Output |
| corrtable | Creates and Saves Out a Correlation Table with Significance Levels Indicated |
| CorrToolBox | Modeling Correlational Magnitude Transformations in Discretization Contexts |
| corrViz | Visualise Correlations |
| corset | Arbitrary Bounding of Series and Time Series Objects |
| corTest | Robust Tests for Equal Correlation |
| corTESTsrd | Significance Testing of Rank Cross-Correlations under SRD |
| corto | Inference of Gene Regulatory Networks |
| corx | Create and Format Correlation Matrices |
| cosa | Bound Constrained Optimal Sample Size Allocation |
| cosimmr | Fast Fitting of Stable Isotope Mixing Models with Covariates |
| cosinor | Tools for Estimating and Predicting the Cosinor Model |
| cosinor2 | Extended Tools for Cosinor Analysis of Rhythms |
| cosmicsig | Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer) |
| cosmoFns | Functions for Cosmological Distances, Times, Luminosities, Etc |
| CoSMoS | Complete Stochastic Modelling Solution |
| cosso | Fit Regularized Nonparametric Regression Models Using COSSO Penalty |
| COST | Copula-Based Semiparametric Models for Spatio-Temporal Data |
| costat | Time Series Costationarity Determination |
| costsensitive | Cost-Sensitive Multi-Class Classification |
| CoTiMA | Continuous Time Meta-Analysis ('CoTiMA') |
| cotram | Count Transformation Models |
| cotrend | Consistent Co-Trending Rank Selection |
| COUNT | Functions, Data and Code for Count Data |
| countcolors | Locates and Counts Pixels Within Color Range(s) in Images |
| countdata | The Beta-Binomial Test for Count Data |
| countDM | Estimation of Count Data Models |
| countdown | A Countdown Timer for HTML Presentations, Documents, and Web Apps |
| Counterfactual | Estimation and Inference Methods for Counterfactual Analysis |
| counterfactuals | Counterfactual Explanations |
| Counternull | Randomization-Based Inference |
| countfitteR | Comprehensive Automatized Evaluation of Distribution Models for Count Data |
| countgmifs | Discrete Response Regression for High-Dimensional Data |
| countHMM | Penalized Estimation of Flexible Hidden Markov Models for Time Series of Counts |
| countland | Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq |
| countprop | Calculate Model-Based Metrics of Proportionality on Count-Based Compositional Data |
| Countr | Flexible Univariate Count Models Based on Renewal Processes |
| countries | Deal with Country Data in an Easy Way |
| countrycode | Convert Country Names and Country Codes |
| CountsEPPM | Mean and Variance Modeling of Count Data |
| countsplit | Splitting a Count Matrix into Independent Folds |
| countSTAR | Flexible Modeling of Count Data |
| countToFPKM | Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM) |
| countTransformers | Transform Counts in RNA-Seq Data Analysis |
| countts | Thomson Sampling for Zero-Inflated Count Outcomes |
| coursekata | Packages and Functions for 'CourseKata' Courses |
| covadap | Implement Covariate-Adaptive Randomization |
| covafillr | Local Polynomial Regression of State Dependent Covariates in State-Space Models |
| covatest | Tests on Properties of Space-Time Covariance Functions |
| covBM | Brownian Motion Processes for 'nlme'-Models |
| CovCombR | Combine Partial Covariance / Relationship Matrices |
| covdepGE | Covariate Dependent Graph Estimation |
| coveffectsplot | Produce Forest Plots to Visualize Covariate Effects |
| covequal | Test for Equality of Covariance Matrices |
| coveR2 | Process Digital Cover Photography Images of Tree Crowns |
| covfefe | Covfefy Any Word, Sentence or Speech |
| covglasso | Sparse Covariance Matrix Estimation |
| COVID19 | R Interface to COVID-19 Data Hub |
| covid19.analytics | Load and Analyze Live Data from the COVID-19 Pandemic |
| covid19br | Brazilian COVID-19 Pandemic Data |
| covid19brazil | COVID-19 Dataset for Brazil |
| covid19dbcand | Selected 'Drugbank' Drugs for COVID-19 Treatment Related Data in R Format |
| covid19france | Cases of COVID-19 in France |
| covid19india | Pulling Clean Data from Covid19india.org |
| covid19italy | The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Dataset |
| covid19sf | The Covid19 San Francisco Dataset |
| covid19srilanka | The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Data in Sri Lanka |
| covid19swiss | COVID-19 Cases in Switzerland and Principality of Liechtenstein |
| covid19tunisia | Cases of COVID-19 in Tunisia |
| covid19us | Cases of COVID-19 in the United States |
| covidcast | Client for Delphi's 'COVIDcast Epidata' API |
| COVIDIBGE | Downloading, Reading and Analyzing PNAD COVID19 Microdata |
| CovidMutations | Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019) |
| covidmx | Descarga y analiza datos de COVID-19 en México |
| covidnor | Public COVID-19 Data for Norway |
| covidprobability | Estimate the Unit-Wide Probability of COVID-19 |
| covidsymptom | COVID Symptom Study Sweden Open Dataset |
| covKCD | Covariance Estimation for Matrix Data with the Kronecker-Core Decomposition |
| covr | Test Coverage for Packages |
| CovRegRF | Covariance Regression with Random Forests |
| covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |
| CovSel | Model-Free Covariate Selection |
| covsep | Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable |
| covsim | VITA, IG and PLSIM Simulation for Given Covariance and Marginals |
| covTestR | Covariance Matrix Tests |
| CovTools | Statistical Tools for Covariance Analysis |
| covtracer | Contextualizing Tests |
| cowbell | Performs Segmented Linear Regression on Two Independent Variables |
| cowplot | Streamlined Plot Theme and Plot Annotations for 'ggplot2' |
| cowsay | Messages, Warnings, Strings with Ascii Animals |
| CoxAIPW | Doubly Robust Inference for Cox Marginal Structural Model with Informative Censoring |
| CoxBcv | Bias-Corrected Sandwich Variance Estimators for Marginal Cox Analysis of Cluster Randomized Trials |
| coxed | Duration-Based Quantities of Interest for the Cox Proportional Hazards Model |
| coxerr | Cox Regression with Dependent Error in Covariates |
| CoxICPen | Variable Selection for Cox's Model with Interval-Censored Data |
| coxme | Mixed Effects Cox Models |
| Coxmos | Cox MultiBlock Survival |
| coxphf | Cox Regression with Firth's Penalized Likelihood |
| coxphm | Time-to-Event Data Analysis with Missing Survival Times |
| coxphSGD | Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model |
| coxphw | Weighted Estimation in Cox Regression |
| CoxPlus | Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects |
| CoxR2 | R-Squared Measure Based on Partial LR Statistic, for the Cox PH Regression Model |
| coxrobust | Fit Robustly Proportional Hazards Regression Model |
| coxrt | Cox Proportional Hazards Regression for Right-Truncated Data |
| coxsei | Fitting a CoxSEI Model |
| CP | Conditional Power Calculations |
| cp4p | Calibration Plot for Proteomics |
| cpa | Confirmatory Path Analysis Through 'd-sep' Tests |
| CPAT | Change Point Analysis Tests |
| CPBayes | Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations |
| CPC | Implementation of Cluster-Polarization Coefficient |
| CPCAT | The Closure Principle Computational Approach Test |
| cPCG | Efficient and Customized Preconditioned Conjugate Gradient Method for Solving System of Linear Equations |
| cpd | Complex Pearson Distributions |
| CPE | Concordance Probability Estimates in Survival Analysis |
| cpfa | Classification with Parallel Factor Analysis |
| CpGassoc | Association Between Methylation and a Phenotype of Interest |
| CpGFilter | CpG Filtering Method Based on Intra-Class Correlation Coefficients |
| CPGLIB | Competing Proximal Gradients Library |
| cpi | Conditional Predictive Impact |
| cplm | Compound Poisson Linear Models |
| cplots | Plots for Circular Data |
| cpm | Sequential and Batch Change Detection Using Parametric and Nonparametric Methods |
| cpmBigData | Fitting Semiparametric Cumulative Probability Models for Big Data |
| CPMCGLM | Correction of the P-Value after Multiple Coding in Generalized Linear Models |
| CpmERCCutoff | Calculation of Log2 Counts per Million Cutoff from ERCC Controls |
| cpmr | Connectome Predictive Modelling in R |
| CPNCoverageAnalysis | Conceptual Properties Norming Studies as Parameter Estimation |
| cpop | Detection of Multiple Changes in Slope in Univariate Time-Series |
| CPoptim | Convex Partition Optimisation |
| CPP | Composition of Probabilistic Preferences (CPP) |
| cpp11 | A C++11 Interface for R's C Interface |
| cpp11armadillo | An 'Armadillo' Interface |
| cpp11eigen | An 'Eigen' Interface |
| cppcheckR | Check 'C' and 'C++' Files using 'Cppcheck' |
| cppdoubles | Fast Relative Comparisons of Floating Point Numbers in 'C++' |
| cppRouting | Algorithms for Routing and Solving the Traffic Assignment Problem |
| cpr | Control Polygon Reduction |
| cprobit | Conditional Probit Model for Analysing Continuous Outcomes |
| cprr | Functions for Working with Danish CPR Numbers |
| cPseudoMaRg | Constructs a Correlated Pseudo-Marginal Sampler |
| cpsR | Load CPS Microdata into R Using the 'Census Bureau Data' API |
| cpss | Change-Point Detection by Sample-Splitting Methods |
| CPsurv | Nonparametric Change Point Estimation for Survival Data |
| cpsurvsim | Simulating Survival Data from Change-Point Hazard Distributions |
| cpsvote | A Toolbox for Using the CPS’s Voting and Registration Supplement |
| cpt | Classification Permutation Test |
| cptcity | 'cpt-city' Colour Gradients |
| CptNonPar | Nonparametric Change Point Detection for Multivariate Time Series |
| cqrReg | Quantile, Composite Quantile Regression and Regularized Versions |
| cquad | Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data |
| CR2 | Compute Cluster Robust Standard Errors with Degrees of Freedom Adjustments |
| CRABS | Congruent Rate Analyses in Birth-Death Scenarios |
| cragg | Tests for Weak Instruments in R |
| cramer | Multivariate Nonparametric Cramer-Test for the Two-Sample-Problem |
| crandep | Network Analysis of Dependencies of CRAN Packages |
| crank | Completing Ranks |
| cranlike | Tools for 'CRAN'-Like Repositories |
| cranlogs | Download Logs from the 'RStudio' 'CRAN' Mirror |
| cranly | Package Directives and Collaboration Networks in CRAN |
| CRANsearcher | RStudio Addin for Searching Packages in CRAN Database Based on Keywords |
| crassmat | Conditional Random Sampling Sparse Matrices |
| crawl | Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data |
| crayon | Colored Terminal Output |
| crayons | Color Palettes from Crayon Boxes |
| crc32c | Cyclic Redundancy Check with CPU-Specific Acceleration |
| crch | Censored Regression with Conditional Heteroscedasticity |
| crctStepdown | Univariate Analysis of Cluster Trials with Multiple Outcomes |
| CRE | Interpretable Discovery and Inference of Heterogeneous Treatment Effects |
| CREAM | Clustering of Genomic Regions Analysis Method |
| createLogicalPCM | Create Logical Pairwise Comparison Matrix for the Analytic Hierarchy Process |
| credentials | Tools for Managing SSH and Git Credentials |
| CRediTas | Generate CRediT Author Statements |
| creditmodel | Toolkit for Credit Modeling, Analysis and Visualization |
| CreditRisk | Evaluation of Credit Risk with Structural and Reduced Form Models |
| CREDS | Calibrated Ratio Estimator under Double Sampling Design |
| credsubs | Credible Subsets |
| credule | Credit Default Swap Functions |
| crew | A Distributed Worker Launcher Framework |
| crew.aws.batch | A Crew Launcher Plugin for AWS Batch |
| crew.cluster | Crew Launcher Plugins for Traditional High-Performance Computing Clusters |
| CRF | Conditional Random Fields |
| crfsuite | Conditional Random Fields for Labelling Sequential Data in Natural Language Processing |
| cricketdata | International Cricket Data |
| cricketr | Analyze Cricketers and Cricket Teams Based on ESPN Cricinfo Statsguru |
| crimCV | Group-Based Modelling of Longitudinal Data |
| crimedata | Access Crime Data from the Open Crime Database |
| crimeutils | A Comprehensive Set of Functions to Clean, Analyze, and Present Crime Data |
| crisp | Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way |
| crispRdesignR | Guide Sequence Design for CRISPR/Cas9 |
| criticality | Modeling Fissile Material Operations in Nuclear Facilities |
| criticalpath | An Implementation of the Critical Path Method |
| critpath | Setting the Critical Path in Project Management |
| CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |
| crm12Comb | Phase I/II CRM Based Drug Combination Design |
| CRMetrics | Cell Ranger Output Filtering and Metrics Visualization |
| crmn | CCMN and Other Normalization Methods for Metabolomics Data |
| crmPack | Object-Oriented Implementation of CRM Designs |
| crmReg | Cellwise Robust M-Regression and SPADIMO |
| crochet | Implementation Helper for '[' and '[<-' of Custom Matrix-Like Types |
| cromwellDashboard | A Dashboard to Visualize Scientific Workflows in 'Cromwell' |
| Cronbach | Cronbach's Alpha |
| crone | Structural Crystallography in 1d |
| cronologia | Create an HTML Vertical Timeline from a Data Frame in 'rmarkdown' and 'shiny' |
| cronR | Schedule R Scripts and Processes with the 'cron' Job Scheduler |
| crop | Graphics Cropping Tool |
| cropcircles | Crops an Image to a Circle |
| cropdatape | Open Data of Agricultural Production of Crops of Peru |
| cropDemand | Spatial Crop Water Demand for Brazil |
| cropgrowdays | Crop Growing Degree Days and Agrometeorological Calculations |
| crops | Changepoints for a Range of Penalties (CROPS) |
| CropScapeR | Access Cropland Data Layer Data via the 'CropScape' Web Service |
| CropWaterBalance | Climate Water Balance for Irrigation Purposes |
| cropZoning | Climate Crop Zoning Based in Air Temperature for Brazil |
| CrossCarry | Analysis of Data from a Crossover Design with GEE |
| CrossClustering | A Partial Clustering Algorithm |
| crossdes | Construction of Crossover Designs |
| crosshap | Local Haplotype Clustering and Visualization |
| crosslag | Perform Linear or Nonlinear Cross Lag Analysis |
| crossmap | Apply Functions to All Combinations of List Elements |
| crossmatch | The Cross-Match Test |
| crossnma | Cross-Design & Cross-Format Network Meta-Analysis and Regression |
| Crossover | Analysis and Search of Crossover Designs |
| crossrun | Joint Distribution of Number of Crossings and Longest Run |
| crosstable | Crosstables for Descriptive Analyses |
| Crosstabs.Loglinear | Cross Tabulation and Loglinear Analyses of Categorical Data |
| crosstalk | Inter-Widget Interactivity for HTML Widgets |
| crosstalkr | Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks |
| crossurr | Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers |
| CrossVA | Verbal Autopsy Data Transformation for InSilicoVA and InterVA5 Algorithms |
| crossval | Generic Functions for Cross Validation |
| CrossValidate | Classes and Methods for Cross Validation of "Class Prediction" Algorithms |
| crossvalidationCP | Cross-Validation for Change-Point Regression |
| crosswalkr | Rename and Encode Data Frames Using External Crosswalk Files |
| crossword.r | Generating Crosswords from Word Lists |
| crov | Constrained Regression Model for an Ordinal Response and Ordinal Predictors |
| crplyr | A 'dplyr' Interface for Crunch |
| crqa | Unidimensional and Multidimensional Methods for Recurrence Quantification Analysis |
| crrcbcv | Bias-Corrected Variance for Competing Risks Regression with Clustered Data |
| crrSC | Competing Risks Regression for Stratified and Clustered Data |
| crrstep | Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model |
| crs | Categorical Regression Splines |
| crseEventStudy | A Robust and Powerful Test of Abnormal Stock Returns in Long-Horizon Event Studies |
| crsmeta | Extract Coordinate System Metadata |
| crsnls | Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe' |
| crso | Cancer Rule Set Optimization ('crso') |
| crsra | Tidying and Analyzing 'Coursera' Research Export Data |
| crsuggest | Obtain Suggested Coordinate Reference System Information for Spatial Data |
| crt2power | Designing Cluster-Randomized Trials with Two Co-Primary Outcomes |
| CRTConjoint | Conditional Randomization Testing (CRT) Approach for Conjoint Analysis |
| CRTgeeDR | Doubly Robust Inverse Probability Weighted Augmented GEE Estimator |
| CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |
| CRTspat | Workflow for Cluster Randomised Trials with Spillover |
| crul | HTTP Client |
| crumble | Flexible and General Mediation Analysis Using Riesz Representers |
| crunch | Crunch.io Data Tools |
| crunchy | Shiny Apps on Crunch |
| cruts | Interface to Climatic Research Unit Time-Series Version 3.21 Data |
| CruzPlot | Plot Shipboard DAS Data |
| crwbmetareg | Cluster Robust Wild Bootstrap Meta Regression |
| CRWRM | Changing the Reference Group without Re-Running the Model |
| cry | Statistics for Structural Crystallography |
| crypto2 | Download Crypto Currency Data from 'CoinMarketCap' without 'API' |
| cryptography | Encrypts and Decrypts Text Ciphers |
| cryptoQuotes | A Streamlined Access to Cryptocurrency OHLC-V Market Data and Sentiment Indicators |
| cryptorng | Access System Cryptographic Pseudorandom Number Generators |
| cryptotrackr | An Interface to Crypto Data Sources |
| cryptoverse | Visualization and Analytics for the Cryptoverse |
| cryptowatchR | An API Wrapper for 'Cryptowatch' |
| CryptRndTest | Statistical Tests for Cryptographic Randomness |
| cryst | Calculate the Relative Crystallinity of Starch by XRD and FTIR |
| csa | A Cross-Scale Analysis Tool for Model-Observation Visualization and Integration |
| csalert | Alerts from Public Health Surveillance Data |
| csampling | Functions for Conditional Simulation in Regression-Scale Models |
| CsChange | Testing for Change in C-Statistic |
| csci | Current Status Confidence Intervals |
| CSclone | Bayesian Nonparametric Modeling in R |
| CSCNet | Fitting and Tuning Regularized Cause-Specific Cox Models with Elastic-Net Penalty |
| csdata | Structural Data for Norway |
| cSEM | Composite-Based Structural Equation Modeling |
| CSeqpat | Frequent Contiguous Sequential Pattern Mining of Text |
| CSESA | CRISPR-Based Salmonella Enterica Serotype Analyzer |
| CSGo | Collecting Counter Strike Global Offensive Data |
| cshapes | The CShapes 2.0 Dataset and Utilities |
| CSHShydRology | Canadian Hydrological Analyses |
| CSIndicators | Climate Services' Indicators Based on Sub-Seasonal to Decadal Predictions |
| csmaps | Preformatted Maps of Norway that Don't Need Geolibraries |
| CSMES | Cost-Sensitive Multi-Criteria Ensemble Selection for Uncertain Cost Conditions |
| csmpv | Biomarker Confirmation, Selection, Modelling, Prediction, and Validation |
| csn | Closed Skew-Normal Distribution |
| csodata | Download Data from the CSO 'PxStat' API |
| cspec | Complete Discrete Fourier Transform (DFT) and Periodogram |
| cspp | A Tool for the Correlates of State Policy Project Data |
| csppData | Data Only: The Correlates of State Policy Project Dataset |
| csquares | Concise Spatial Query and Representation System (c-Squares) |
| csranks | Statistical Tools for Ranks |
| cssTools | Cognitive Social Structure Tools |
| cstab | Selection of Number of Clusters via Normalized Clustering Instability |
| cstidy | Helpful Functions for Cleaning Surveillance Data |
| cstime | Date and Time Functions for Public Health Purposes |
| CSTools | Assessing Skill of Climate Forecasts on Seasonal-to-Decadal Timescales |
| csurvey | Constrained Regression for Survey Data |
| csutil | Common Base-R Problems Relating to Lists |
| csv | Read and Write CSV Files with Selected Conventions |
| csvread | Fast Specialized CSV File Loader |
| csvwr | Read and Write CSV on the Web (CSVW) Tables and Metadata |
| csvy | Import and Export CSV Data with a YAML Metadata Header |
| cta | Contingency Table Analysis Based on ML Fitting of MPH Models |
| CTAShiny | Interactive Application for Working with Contingency Tables |
| ctbi | A Procedure to Clean, Decompose and Aggregate Timeseries |
| CTD | A Method for 'Connecting The Dots' in Weighted Graphs |
| ctf | Read and Write Column Text Format (CTF) |
| ctgdist | Likert Category Distance Calculator |
| ctgt | Closed Testing with Globaltest for Pathway Analysis |
| cthist | Clinical Trial Registry History |
| cthreshER | Continuous Threshold Expectile Regression |
| ctl | Correlated Trait Locus Mapping |
| CTM | A Text Mining Toolkit for Chinese Document |
| ctmcd | Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data |
| ctmcmove | Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains |
| ctmle | Collaborative Targeted Maximum Likelihood Estimation |
| ctmm | Continuous-Time Movement Modeling |
| ctmva | Continuous-Time Multivariate Analysis |
| CTNote | CTN Outcomes, Treatments, and Endpoints |
| cTOST | Finite Sample Correction of the Two One-Sided Tests in the Univariate Framework |
| ctpm | Continuous-Time Phylogenetic Modeling |
| ctqr | Censored and Truncated Quantile Regression |
| ctrdata | Retrieve and Analyze Clinical Trials in Public Registers |
| ctrialsgov | Query Data from U.S. National Library of Medicine's Clinical Trials Database |
| CTRing | Density Profiles of Wood from CT Scan Images |
| ctrlGene | Assess the Stability of Candidate Housekeeping Genes |
| ctsem | Continuous Time Structural Equation Modelling |
| ctsemOMX | Continuous Time SEM - 'OpenMx' Based Functions |
| ctsfeatures | Analyzing Categorical Time Series |
| CTShiny | Interactive Document for Working with Classification Tree Analysis |
| CTShiny2 | Interactive Document for Working with Classification Tree Analysis |
| CTT | Classical Test Theory Functions |
| CTTinShiny | Shiny Interface for the CTT Package |
| CTTShiny | Classical Test Theory via Shiny |
| ctv | CRAN Task Views |
| ctxR | Utilities for Interacting with the 'CTX' APIs |
| CUB | A Class of Mixture Models for Ordinal Data |
| cubar | Codon Usage Bias Analysis |
| cubature | Adaptive Multivariate Integration over Hypercubes |
| cubble | A Vector Spatio-Temporal Data Structure for Data Analysis |
| cubelyr | A Data Cube 'dplyr' Backend |
| cubeview | View 3D Raster Cubes Interactively |
| cubfits | Codon Usage Bias Fits |
| cubicBsplines | Computation of a Cubic B-Spline Basis and Its Derivatives |
| cubing | Rubik's Cube Solving |
| Cubist | Rule- And Instance-Based Regression Modeling |
| cucumber | Behavior-Driven Development for R |
| cuda.ml | R Interface for the RAPIDS cuML Suite of Libraries |
| CUFF | Charles's Utility Function using Formula |
| cultevo | Tools, Measures and Statistical Tests for Cultural Evolution |
| CUMP | Analyze Multivariate Phenotypes by Combining Univariate Results |
| cumprinc | Functions Centered Around Microsoft Excel Cumprinc Function |
| cumSeg | Change Point Detection in Genomic Sequences |
| cumstats | Cumulative Descriptive Statistics |
| cumulcalib | Cumulative Calibration Assessment for Prediction Models |
| cumulocityr | Client for the 'Cumulocity' API |
| cuperdec | Cumulative Percent Decay Curve Generator |
| cuRe | Parametric Cure Model Estimation |
| CureAuxSP | Mixture Cure Models with Auxiliary Subgroup Survival Probabilities |
| CureDepCens | Dependent Censoring Regression Models with Cure Fraction |
| curephEM | NPMLE for Logistic-Cox Cure-Rate Model |
| cureplots | CURE (Cumulative Residual) Plots |
| curesurv | Mixture and Non Mixture Parametric Cure Models to Estimate Cure Indicators |
| curl | A Modern and Flexible Web Client for R |
| currencyapi | Client for the 'currencyapi.com' Currency Conversion API |
| currentSurvival | Estimation of CCI and CLFS Functions |
| CurricularAnalytics | Exploring and Analyzing Academic Curricula |
| currr | Apply Mapping Functions in Frequent Saving |
| curry | Partial Function Application with %<%, %-<%, and %><% |
| cursr | Cursor and Terminal Manipulation |
| curstatCI | Confidence Intervals for the Current Status Model |
| curtailment | Finds Binary Outcome Designs Using Stochastic Curtailment |
| curvecomp | Multiple Curve Comparisons Using Parametric Bootstrap |
| curveDepth | Tukey Curve Depth and Distance in the Space of Curves |
| curvHDR | Filtering of Flow Cytometry Samples |
| curvir | Specify Reserve Demand Curves |
| cusp | Cusp-Catastrophe Model Fitting Using Maximum Likelihood |
| custom.gauss.quad | Custom Made Gauss Quadrature Nodes and Weights |
| CustomDerivative | Pricing Various Types of Custom Derivatives |
| CustomerScoringMetrics | Evaluation Metrics for Customer Scoring Models Depending on Binary Classifiers |
| customiser | Use R Markdown to Write your "Rprofile" |
| customizedTraining | Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models |
| CustosAscensor | Costs Allocation for the Installation of an Elevator |
| cusum | Cumulative Sum (CUSUM) Charts for Monitoring of Hospital Performance |
| cusumcharter | Easier CUSUM Control Charts |
| CUSUMdesign | Compute Decision Interval and Average Run Length for CUSUM Charts |
| cutoff | Seek the Significant Cutoff Value |
| cutpointr | Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks |
| CutpointsOEHR | Optimal Equal-HR Method to Find Two Cutpoints for U-Shaped Relationships in Cox Model |
| cv | Cross-Validating Regression Models |
| cvap | Citizen Voting Age Population |
| cvar | Compute Expected Shortfall and Value at Risk for Continuous Distributions |
| cvasi | Calibration, Validation, and Simulation of TKTD Models |
| cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |
| cvCovEst | Cross-Validated Covariance Matrix Estimation |
| cvcrand | Efficient Design and Analysis of Cluster Randomized Trials |
| CVD | Color Vision Deficiencies |
| cvequality | Tests for the Equality of Coefficients of Variation from Multiple Groups |
| cvGEE | Cross-Validated Predictions from GEE |
| CVglasso | Lasso Penalized Precision Matrix Estimation |
| cvLM | Cross-Validation for Linear & Ridge Regression Models |
| cvmaPLFAM | Cross-Validation Model Averaging for Partial Linear Functional Additive Models |
| cvmdisc | Cramer von Mises Tests for Discrete or Grouped Distributions |
| cvmgof | Cramer-von Mises Goodness-of-Fit Tests |
| CvmortalityMult | Cross-Validation for Multi-Population Mortality Models |
| cvms | Cross-Validation for Model Selection |
| CVR | Canonical Variate Regression |
| CVrisk | Compute Risk Scores for Cardiovascular Diseases |
| cvsem | SEM Model Comparison with K-Fold Cross-Validation |
| CVST | Fast Cross-Validation via Sequential Testing |
| CVThresh | Level-Dependent Cross-Validation Thresholding |
| cvTools | Cross-Validation Tools for Regression Models |
| cvwrapr | Tools for Cross Validation |
| CVXR | Disciplined Convex Optimization |
| cwot | Cauchy Weighted Joint Test for Pharmacogenetics Analysis |
| CWT | Continuous Wavelet Transformation for Spectroscopy |
| cxhull | Convex Hull |
| cxr | A Toolbox for Modelling Species Coexistence in R |
| cxxfunplus | Extend 'cxxfunction' by Saving the Dynamic Shared Objects |
| cycleRtools | Tools for Cycling Data Analysis |
| cyclestreets | Cycle Routing and Data for Cycling Advocacy |
| cyclocomp | Cyclomatic Complexity of R Code |
| cycloids | Tools for Calculating Hypocycloids, Epicycloids, Hypotrochoids, and Epitrochoids |
| cyclomort | Survival Modeling with a Periodic Hazard Function |
| Cyclops | Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis |
| cyclotomic | The Field of Cyclotomic Numbers |
| cyjShiny | Cytoscape.js Shiny Widget (cyjShiny) |
| cylcop | Circular-Linear Copulas with Angular Symmetry for Movement Data |
| cymruservices | Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services |
| cyphr | High Level Encryption Wrappers |
| cystiSim | Agent-Based Model for Taenia_solium Transmission and Control |
| CytobankAPI | Cytobank API Wrapper for R |
| cytofan | Plot Fan Plots for Cytometry Data using 'ggplot2' |
| cytometree | Automated Cytometry Gating and Annotation |
| cytominer | Methods for Image-Based Cell Profiling |
| CytOpT | Optimal Transport for Gating Transfer in Cytometry Data with Domain Adaptation |
| CytoSimplex | Simplex Visualization of Cell Fate Similarity in Single-Cell Data |
| czechrates | Czech Interest & Foreign Exchange Rates |
| czso | Use Open Data from the Czech Statistical Office in R |
| D2MCS | Data Driving Multiple Classifier System |
| D3GB | Interactive Genome Browser |
| D3mirt | Descriptive 3D Multidimensional Item Response Theory Modelling |
| d3Network | Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R |
| D3partitionR | Interactive Charts of Nested and Hierarchical Data with 'D3.js' |
| d3plus | Seamless 'D3Plus' Integration |
| d3po | Fast and Beautiful Interactive Visualization for 'Markdown' and 'Shiny' |
| d3r | 'd3.js' Utilities for R |
| d3Tree | Create Interactive Collapsible Trees with the JavaScript 'D3' Library |
| d4storagehub4R | Interface to 'D4Science' 'StorageHub' API |
| D4TAlink.light | FAIR Data - Workflow Management |
| DA | Discriminant Analysis for Evolutionary Inference |
| DAAG | Data Analysis and Graphics Data and Functions |
| DAAGbio | Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences |
| daarem | Damped Anderson Acceleration with Epsilon Monotonicity for Accelerating EM-Like Monotone Algorithms |
| dabestr | Data Analysis using Bootstrap-Coupled Estimation |
| dabr | Database Management with R |
| dacc | Detection and Attribution Analysis of Climate Change |
| DACF | Data Analysis with Ceiling and/or Floor Data |
| dad | Three-Way / Multigroup Data Analysis Through Densities |
| dadjoke | Displays a Dad Joke |
| dadjokeapi | Return a Random Dad Joke |
| dados | Translate Datasets to Portuguese |
| dae | Functions Useful in the Design and ANOVA of Experiments |
| daewr | Design and Analysis of Experiments with R |
| daff | Diff, Patch and Merge for Data.frames |
| dafishr | Download, Wrangle, and Analyse Vessel Monitoring System Data |
| dafs | Data Analysis for Forensic Scientists |
| dagirlite | Spatial Vector Data for Danmarks Administrative Geografiske Inddeling DAGI |
| dagitty | Graphical Analysis of Structural Causal Models |
| dagR | Directed Acyclic Graphs: Analysis and Data Simulation |
| dagwood | DAGs with Omitted Objects Displayed (DAGWOOD) |
| dail | Data from Access to Information Law |
| DAIME | Effects of Changing Deposition Rates |
| daiquiri | Data Quality Reporting for Temporal Datasets |
| daiR | Interface with Google Cloud Document AI API |
| DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |
| DAISIEprep | Extracts Phylogenetic Island Community Data from Phylogenetic Trees |
| DAKS | Data Analysis and Knowledge Spaces |
| DALEX | moDel Agnostic Language for Exploration and eXplanation |
| DALEXtra | Extension for 'DALEX' Package |
| DALSM | Nonparametric Double Additive Location-Scale Model (DALSM) |
| daltoolbox | Leveraging Experiment Lines to Data Analytics |
| daltoolboxdp | Data Pre-Processing Extensions |
| DALY | The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R |
| dam | Data Analysis Metabolomics |
| damAOI | Create an 'Area of Interest' Around a Constructed Dam for Comparative Impact Evaluations |
| DamiaNN | Neural Network Numerai |
| DAMOCLES | Dynamic Assembly Model of Colonization, Local Extinction and Speciation |
| dampack | Decision-Analytic Modeling Package |
| damr | Interface to Drosophila Activity Monitor System Result Files |
| dams | Dams in the United States from the National Inventory of Dams (NID) |
| DandEFA | Dandelion Plot for R-Mode Exploratory Factor Analysis |
| dang | 'Dang' Associated New Goodies |
| dani | Design and Analysis of Non-Inferiority Trials |
| DanielBiostatistics10th | Functions for Wayne W. Daniel's Biostatistics, Tenth Edition |
| dann | Discriminant Adaptive Nearest Neighbor Classification |
| danstat | R Client for the Statistics Denmark Databank API |
| dapper | Data Augmentation for Private Posterior Estimation |
| daqapo | Data Quality Assessment for Process-Oriented Data |
| DArand | Differential Analysis with Random Reference Genes |
| Dark | The Analysis of Dark Adaptation Data |
| DarkDiv | Estimating Dark Diversity and Site-Specific Species Pools |
| darksky | Tools to Work with the 'Dark Sky' 'API' |
| dartR | Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis |
| dartR.base | Analysing 'SNP' and 'Silicodart' Data - Basic Functions |
| dartR.captive | Analysing 'SNP' Data to Support Captive Breeding |
| dartR.data | Auxiliary Data Package for Our Main Package 'dartR' |
| dartR.popgen | Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis |
| dartR.sexlinked | Analysing SNP Data to Identify Sex-Linked Markers |
| dartR.sim | Computer Simulations of 'SNP' Data |
| dartR.spatial | Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data |
| dartRverse | Install and Load the 'dartRverse' Suits of Packages |
| dashboardthemes | Customise the Appearance of 'shinydashboard' Applications using Themes |
| Dasst | Tools for Reading, Processing and Writing 'DSSAT' Files |
| dat | Tools for Data Manipulation |
| data.table | Extension of 'data.frame' |
| data.tree | General Purpose Hierarchical Data Structure |
| data.validator | Automatic Data Validation and Reporting |
| data360r | Wrapper for 'TCdata360' and 'Govdata360' API |
| DatabaseConnector | Connecting to Various Database Platforms |
| DatabaseConnectorJars | JAR Dependencies for the 'DatabaseConnector' Package |
| DatabionicSwarm | Swarm Intelligence for Self-Organized Clustering |
| databraryr | Interact with the 'Databrary.org' API |
| dataclass | Easily Create Structured Lists or Data Frames with Input Validation |
| DataClean | Data Cleaning |
| datacleanr | Interactive and Reproducible Data Cleaning |
| DataCombine | Tools for Easily Combining and Cleaning Data Sets |
| dataCompareR | Compare Two Data Frames and Summarise the Difference |
| datacutr | SDTM Datacut |
| datadictionary | Create a Data Dictionary |
| datadogr | R Client for 'Datadog' API |
| datadriftR | Concept Drift Detection Methods for Stream Data |
| DataEditR | An Interactive Editor for Viewing, Entering, Filtering & Editing Data |
| DataExplorer | Automate Data Exploration and Treatment |
| DataFakeR | Generate Fake Data for Relational Databases |
| dataframeexplorer | Familiarity with Dataframes Before Data Manipulation |
| datafsm | Estimating Finite State Machine Models from Data |
| datagovsgR | Call Real Time APIs from Data Gov Singapore |
| DataGraph | Export Data from 'R' to 'DataGraph' |
| DataLoader | Import Multiple File Types |
| dataMaid | A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process |
| dataMeta | Create and Append a Data Dictionary for an R Dataset |
| DataMetProcess | Meteorological Data Processing |
| datamods | Modules to Import and Manipulate Data in 'Shiny' |
| dataMojo | Reshape Data Table |
| datana | Datasets and Functions to Accompany Analisis De Datos Con R |
| datanugget | Create, and Refine Data Nuggets |
| dataonderivatives | Easily Source Publicly Available Data on Derivatives |
| dataone | R Interface to the DataONE REST API |
| datapack | A Flexible Container to Transport and Manipulate Data and Associated Resources |
| DataPackageR | Construct Reproducible Analytic Data Sets as R Packages |
| datapasta | R Tools for Data Copy-Pasta |
| dataprep | Efficient and Flexible Data Preprocessing Tools |
| dataPreparation | Automated Data Preparation |
| dataquieR | Data Quality in Epidemiological Research |
| datardis | Data from the Doctor Who Series |
| dataReporter | Reproducible Data Screening Checks and Report of Possible Errors |
| dataresqc | C3S Quality Control Tools for Historical Climate Data |
| dataRetrieval | Retrieval Functions for USGS and EPA Hydrology and Water Quality Data |
| datarium | Data Bank for Statistical Analysis and Visualization |
| datarobot | 'DataRobot' Predictive Modeling API |
| datasailr | Row by Row Data Processing Tool, Using 'DataSailr' Script |
| datasauRus | Datasets from the Datasaurus Dozen |
| dataSDA | Data Sets for Symbolic Data Analysis |
| dataseries | Switzerland's Data Series in One Place |
| datasetjson | Read and Write CDISC Dataset JSON Files |
| datasets.load | Graphical Interface for Loading Datasets |
| datasetsICR | Datasets from the Book "An Introduction to Clustering with R" |
| DataSetsUni | A Collection of Univariate Data Sets |
| DataSpaceR | Interface to 'the CAVD DataSpace' |
| dataspice | Create Lightweight Schema.org Descriptions of Data |
| DatAssim | Data Assimilation |
| datastepr | An Implementation of a SAS-Style Data Step |
| DatastreamDSWS2R | Provides a Link Between the 'LSEG Datastream' System and R |
| DatastreamR | Datastream API |
| DATAstudio | The Research Data Warehouse of Miguel de Carvalho |
| DataSum | Comprehensive Data Summarization for Statistical Analysis |
| dataverifyr | A Lightweight, Flexible, and Fast Data Validation Package that Can Handle All Sizes of Data |
| dataverse | Client for Dataverse 4+ Repositories |
| DataVisualizations | Visualizations of High-Dimensional Data |
| DataViz | Data Visualisation Using an HTML Page and 'D3.js' |
| datawizard | Easy Data Wrangling and Statistical Transformations |
| datazoom.amazonia | Simplify Access to Data from the Amazon Region |
| date | Functions for Handling Dates |
| dateback | Collect and Install R Packages on a Specified Date with Dependencies |
| datefixR | Standardize Dates in Different Formats or with Missing Data |
| daterangepicker | Create a Shiny Date-Range Input |
| datetime | Nominal Dates, Times, and Durations |
| datetimeoffset | Datetimes with Optional UTC Offsets and/or Heterogeneous Time Zones |
| DateTimeRangePicker | A Datetime Range Picker Widget for Usage in 'Shiny' Applications |
| datetimeutils | Utilities for Dates and Times |
| datetoiso | Modify Dates to ISO Standard ("International Organization for Standardization") |
| dateutils | Date Utils |
| datoramar | Interface to the 'Datorama' API |
| datos | Traduce al Español Varios Conjuntos de Datos de Práctica |
| datplot | Preparation of Object Dating Ranges for Density Plots (Aoristic Analysis) |
| datr | 'Dat' Protocol Interface |
| datrProfile | Column Profile for Tables and Datasets |
| dauphin | Compact Standard for Australian Phone Numbers |
| Davies | The Davies Quantile Function |
| dawai | Discriminant Analysis with Additional Information |
| daymetr | Interface to the 'Daymet' Web Services |
| daySupply | Calculating Days' Supply and Daily Dose of Prescriptions |
| dbacf | Autocovariance Estimation via Difference-Based Methods |
| dbarts | Discrete Bayesian Additive Regression Trees Sampler |
| dbcsp | Distance-Based Common Spatial Patterns |
| dbd | Discretised Beta Distribution |
| DBEST | Detecting Breakpoints and Estimating Segments in Trend |
| DBfit | A Double Bootstrap Method for Analyzing Linear Models with Autoregressive Errors |
| dbflobr | Read and Write Files to SQLite Databases |
| dbGaPCheckup | dbGaP Checkup |
| dbglm | Generalised Linear Models by Subsampling and One-Step Polishing |
| DBHC | Sequence Clustering with Discrete-Output HMMs |
| dbhydroR | 'DBHYDRO' Hydrologic and Water Quality Data |
| DBI | R Database Interface |
| DBItest | Testing DBI Backends |
| dblcens | Compute the NPMLE of Distribution Function from Doubly Censored Data, Plus the Empirical Likelihood Ratio for F(T) |
| dBlockmodeling | Deterministic Blockmodeling of Signed, One-Mode and Two-Mode Networks |
| dblr | Discrete Boosting Logistic Regression |
| dbMC | Confidence Interval for Matrix Completion via De-Biased Estimator |
| DBModelSelect | Distribution-Based Model Selection |
| dbmss | Distance-Based Measures of Spatial Structures |
| dbnlearn | Dynamic Bayesian Network Structure Learning, Parameter Learning and Forecasting |
| DBNMFrank | Rank Selection for Non-Negative Matrix Factorization |
| dbnR | Dynamic Bayesian Network Learning and Inference |
| dbparser | Drugs Databases Parser |
| dbplot | Simplifies Plotting Data Inside Databases |
| dbplyr | A 'dplyr' Back End for Databases |
| DBpower | Finite Sample Power Calculations for Detection Boundary Tests |
| DBR | Discrete Beta Regression |
| dbscan | Density-Based Spatial Clustering of Applications with Noise (DBSCAN) and Related Algorithms |
| dbstats | Distance-Based Statistics |
| DBTC | Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis |
| DBTCShiny | Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis 'shiny' Application |
| dbw | Doubly Robust Distribution Balancing Weighting Estimation |
| dbWebForms | Produce R Functions to Create HTML Forms Based on SQL Meta Data |
| dbx | A Fast, Easy-to-Use Database Interface |
| dc3net | Inferring Condition-Specific Networks via Differential Network Inference |
| DCCA | Detrended Fluctuation and Detrended Cross-Correlation Analysis |
| DCchoice | Analyzing Dichotomous Choice Contingent Valuation Data |
| dccmidas | DCC Models with GARCH and GARCH-MIDAS Specifications in the Univariate Step, RiskMetrics, Moving Covariance and Scalar and Diagonal BEKK Models |
| dccpp | Fast Computation of Distance Correlations |
| DCEM | Clustering Big Data using Expectation Maximization Star (EM*) Algorithm |
| DCEmgmt | DCE Data Reshaping and Processing |
| DCEtool | Efficient and Accessible Discrete Choice Experiments |
| DCG | Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis |
| DChaos | Chaotic Time Series Analysis |
| dChipIO | Methods for Reading dChip Files |
| dcifer | Genetic Relatedness Between Polyclonal Infections |
| DCL | Claims Reserving under the Double Chain Ladder Model |
| DCLEAR | Distance Based Cell Lineage Reconstruction |
| dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |
| dclust | Divisive Hierarchical Clustering |
| DCluster | Functions for the Detection of Spatial Clusters of Diseases |
| DClusterm | Model-Based Detection of Disease Clusters |
| dcm2 | Calculating the M2 Model Fit Statistic for Diagnostic Classification Models |
| dcmle | Hierarchical Models Made Easy with Data Cloning |
| dcmodify | Modify Data Using Externally Defined Modification Rules |
| DCODE | List Linear n-Peptide Constraints for Overlapping Protein Regions |
| dcortools | Providing Fast and Flexible Functions for Distance Correlation Analysis |
| dcorVS | Variable Selection Algorithms Using the Distance Correlation |
| dcov | A Fast Implementation of Distance Covariance |
| dCovTS | Distance Covariance and Correlation for Time Series Analysis |
| DCPO | Dynamic Comparative Public Opinion |
| DCSmooth | Nonparametric Regression and Bandwidth Selection for Spatial Models |
| dcTensor | Discrete Matrix/Tensor Decomposition |
| dCUR | Dimension Reduction with Dynamic CUR |
| dcurver | Utility Functions for Davidian Curves |
| dcurves | Decision Curve Analysis for Model Evaluation |
| ddalpha | Depth-Based Classification and Calculation of Data Depth |
| ddc | Distance Density Clustering Algorithm |
| DDD | Diversity-Dependent Diversification |
| dde | Solve Delay Differential Equations |
| ddecompose | Detailed Distributional Decomposition |
| DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |
| ddi | The Data Defect Index for Samples that May not be IID |
| ddiv | Data Driven I-v Feature Extraction |
| DDIwR | DDI with R |
| DDL | Doubly Debiased Lasso (DDL) |
| DDM | Death Registration Coverage Estimation |
| ddml | Double/Debiased Machine Learning |
| DDoutlier | Distance & Density-Based Outlier Detection |
| ddp | Desirable Dietary Pattern |
| ddpca | Diagonally Dominant Principal Component Analysis |
| ddpcr | Analysis and Visualization of Droplet Digital PCR in R and on the Web |
| ddplot | Create D3 Based SVG Graphics |
| DDPM | Data Sets for Discrete Probability Models |
| DDPNA | Disease-Drived Differential Proteins Co-Expression Network Analysis |
| DDRTree | Learning Principal Graphs with DDRTree |
| ddsPLS | Data-Driven Sparse Partial Least Squares |
| ddst | Data Driven Smooth Tests |
| ddtlcm | Latent Class Analysis with Dirichlet Diffusion Tree Process Prior |
| deadband | Statistical Deadband Algorithms Comparison |
| deal | Learning Bayesian Networks with Mixed Variables |
| deaR | Conventional and Fuzzy Data Envelopment Analysis |
| debar | A Post-Clustering Denoiser for COI-5P Barcode Data |
| DEBBI | Differential Evolution-Based Bayesian Inference |
| debest | Duration Estimation for Biomarker Enrichment Studies and Trials |
| DebiasInfer | Efficient Inference on High-Dimensional Linear Model with Missing Outcomes |
| deBif | Bifurcation Analysis of Ordinary Differential Equation Systems |
| deBInfer | Bayesian Inference for Differential Equations |
| debkeepr | Analysis of Non-Decimal Currencies and Double-Entry Bookkeeping |
| DeBoinR | Box-Plots and Outlier Detection for Probability Density Functions |
| debugme | Debug R Packages |
| debugr | Debug Tool to Watch Objects/Expressions While Running an R Script |
| DeCAFS | Detecting Changes in Autocorrelated and Fluctuating Signals |
| DECIDE | DEComposition of Indirect and Direct Effects |
| decido | Bindings for 'Mapbox' Ear Cutting Triangulation Library |
| decision | Statistical Decision Analysis |
| decisionSupport | Quantitative Support of Decision Making under Uncertainty |
| deckgl | An R Interface to 'deck.gl' |
| declared | Functions for Declared Missing Values |
| DeclareDesign | Declare and Diagnose Research Designs |
| decode | Differential Co-Expression and Differential Expression Analysis |
| decoder | Decode Coded Variables to Plain Text and the Other Way Around |
| decompDL | Decomposition Based Deep Learning Models for Time Series Forecasting |
| decomposedPSF | Time Series Prediction with PSF and Decomposition Methods (EMD and EEMD) |
| DecomposeR | Empirical Mode Decomposition for Cyclostratigraphy |
| decompr | Global Value Chain Decomposition |
| deconvolveR | Empirical Bayes Estimation Strategies |
| decor | Retrieve Code Decorations |
| DecorateR | Fit and Deploy DECORATE Trees |
| decorators | Extend the Behaviour of a Function without Explicitly Modifying it |
| decp | Complete Change Point Analysis |
| Deducer | A Data Analysis GUI for R |
| deducorrect | Deductive Correction, Deductive Imputation, and Deterministic Correction |
| deductive | Data Correction and Imputation Using Deductive Methods |
| DeductiveR | Deductive Rational Method |
| deduped | Making "Deduplicated" Functions |
| dedupewider | Deduplication Across Multiple Columns |
| deep | A Neural Networks Framework |
| deepdep | Visualise and Explore the Deep Dependencies of R Packages |
| deepdive | Deep Learning for General Purpose |
| deepgmm | Deep Gaussian Mixture Models |
| deepgp | Bayesian Deep Gaussian Processes using MCMC |
| DeepLearningCausal | Causal Inference with Super Learner and Deep Neural Networks |
| deeplr | Interface to the 'DeepL' Translation API |
| deepMOU | Clustering of Short Texts by Mixture of Unigrams and Its Deep Extensions |
| deepnet | Deep Learning Toolkit in R |
| deepNN | Deep Learning |
| deepredeff | Deep Learning Prediction of Effectors |
| deepregression | Fitting Deep Distributional Regression |
| deepRstudio | Seamless Language Translation in 'RStudio' using 'DeepL' API and 'Rstudioapi' |
| deeptime | Plotting Tools for Anyone Working in Deep Time |
| deeptrafo | Fitting Deep Conditional Transformation Models |
| DEET | Differential Expression Enrichment Tool |
| DEEVD | Density Estimation by Extreme Value Distributions |
| default | Change the Default Arguments in R Functions |
| defineOptions | Define and Parse Command Line Options |
| defineR | Creates Define XML Documents |
| deFit | Fitting Differential Equations to Time Series Data |
| deflateBR | Deflate Nominal Brazilian Reais |
| deflist | Deferred List - A Read-Only List-Like Object with Deferred Access |
| deforestable | Classify RGB Images into Forest or Non-Forest |
| deform | Spatial Deformation and Dimension Expansion Gaussian Processes |
| deformula | Integration of One-Dimensional Functions with Double Exponential Formulas |
| degday | Compute Degree Days |
| DEGRE | Inferring Differentially Expressed Genes using Generalized Linear Mixed Models |
| degreenet | Models for Skewed Count Distributions Relevant to Networks |
| degross | Density Estimation from GROuped Summary Statistics |
| DEHOGT | Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data |
| dejaVu | Multiple Imputation for Recurrent Events |
| Delaporte | Statistical Functions for the Delaporte Distribution |
| delayed | A Framework for Parallelizing Dependent Tasks |
| DelayedEffect.Design | Sample Size and Power Calculations using the APPLE, SEPPLE, APPLE+ and SEPPLE+ Methods |
| deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |
| Delta | Measure of Agreement Between Two Raters |
| deltaccd | Quantify Rhythmic Gene Co-Expression Relative to a Reference |
| DeltaMAN | Delta Measurement of Agreement for Nominal Data |
| deltaPlotR | Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method |
| DELTD | Kernel Density Estimation using Lifetime Distributions |
| DEM | The Distributed EM Algorithms in Multivariate Gaussian Mixture Models |
| dematel | Decision Making Trial and Evaluation Laboratory Technique in R |
| demic | Dynamic Estimator of Microbial Communities |
| deming | Deming, Theil-Sen, Passing-Bablock and Total Least Squares Regression |
| DemoDecomp | Decompose Demographic Functions |
| demodelr | Simulating Differential Equations with Data |
| demogR | Analysis of Age-Structured Demographic Models |
| DemografixeR | Extrapolate Gender, Age and Nationality of a Name |
| demoGraphic | Providing Demographic Table with the P-Value, Standardized Mean Difference Value |
| DemographicTable | Creating Demographic Table |
| demography | Forecasting Mortality, Fertility, Migration and Population Data |
| demoKde | Kernel Density Estimation for Demonstration Purposes |
| DemoKin | Estimate Population Kin Distribution |
| demoShiny | Runs a 'Shiny' App as Demo or Lists All Demo 'Shiny' Apps |
| DEMOVA | DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set |
| demu | Optimal Design Emulators via Point Processes |
| dendextend | Extending 'dendrogram' Functionality in R |
| dendRoAnalyst | A Tool for Processing and Analyzing Dendrometer Data |
| dendroextras | Extra Functions to Cut, Label and Colour Dendrogram Clusters |
| dendrometry | Forest Estimations and Dendrometric Computations |
| dendroNetwork | Create Networks of Dendrochronological Series using Pairwise Similarity |
| DendroSync | A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies |
| dendroTools | Linear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data |
| DendSer | Dendrogram Seriation: Ordering for Visualisation |
| dendsort | Modular Leaf Ordering Methods for Dendrogram Nodes |
| denguedatahub | A Tidy Format Datasets of Dengue by Country |
| denim | Generate and Simulate Deterministic Discrete-Time Compartmental Models |
| denoiSeq | Differential Expression Analysis Using a Bottom-Up Model |
| denoiseR | Regularized Low Rank Matrix Estimation |
| denovolyzeR | Statistical Analyses of De Novo Genetic Variants |
| denseFLMM | Functional Linear Mixed Models for Densely Sampled Data |
| densEstBayes | Density Estimation via Bayesian Inference Engines |
| densitr | Analysing Density Profiles from Resistance Drilling of Trees |
| densityarea | Polygons of Bivariate Density Distributions |
| densityClust | Clustering by Fast Search and Find of Density Peaks |
| DensParcorr | Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks |
| densratio | Density Ratio Estimation |
| denstrip | Density Strips and Other Methods for Compactly Illustrating Distributions |
| denvax | Simple Dengue Test and Vaccinate Cost Thresholds |
| DEoptim | Global Optimization by Differential Evolution |
| DEoptimR | Differential Evolution Optimization in Pure R |
| depcache | Cache R Expressions, Taking Their Dependencies into Account |
| DepCens | Dependent Censoring Regression Models |
| depCensoring | Statistical Methods for Survival Data with Dependent Censoring |
| depcoeff | Dependency Coefficients |
| depend.truncation | Statistical Methods for the Analysis of Dependently Truncated Data |
| depigner | A Utility Package to Help you Deal with "Pignas" |
| DepLogo | Dependency Logo |
| depmix | Dependent Mixture Models |
| depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |
| DEPONS2R | Read, Plot and Analyse Output from the DEPONS Model |
| deps | Dependency Management with 'roxygen'-Style Comments |
| depth.plot | Multivariate Analogy of Quantiles |
| DepthProc | Statistical Depth Functions for Multivariate Analysis |
| depthTools | Depth Tools Package |
| DeRezende.Ferreira | Zero Coupon Yield Curve Modelling |
| Deriv | Symbolic Differentiation |
| derivmkts | Functions and R Code to Accompany Derivatives Markets |
| DES | Discrete Event Simulation |
| desc | Manipulate DESCRIPTION Files |
| descomponer | Seasonal Adjustment by Frequency Analysis |
| descr | Descriptive Statistics |
| describedata | Miscellaneous Descriptive Functions |
| DescribeDF | Description of a Data Frame |
| DescribeDisplay | An Interface to the 'DescribeDisplay' 'GGobi' Plugin |
| describer | Describe Data in R Using Common Descriptive Statistics |
| descriptio | Descriptive Statistical Analysis |
| DescriptiveRepresentationCalculator | Descriptive Representation Calculator: Characterizing Observed and Expected Representation |
| DescriptiveStats.OBeu | Descriptive Statistics 'OpenBudgets.eu' |
| DescriptiveWH | Descriptive Statistics |
| descriptr | Generate Descriptive Statistics |
| DescrTab2 | Publication Quality Descriptive Statistics Tables |
| descstat | Tools for Descriptive Statistics |
| descstatsr | Descriptive Univariate Statistics |
| desctable | Produce Descriptive and Comparative Tables Easily |
| DescTools | Tools for Descriptive Statistics |
| DescToolsAddIns | Interactive Functions to be Used as Shortcuts in 'RStudio' |
| deseats | Data-Driven Locally Weighted Regression for Trend and Seasonality in TS |
| Design.parameters | Parameters of the Experimental Designs |
| DesignCTPB | Design Clinical Trials with Potential Biomarker Effect |
| designer | 'Shiny' UI Prototype Builder |
| designit | Blocking and Randomization for Experimental Design |
| DesignLibrary | Library of Research Designs |
| designmatch | Matched Samples that are Balanced and Representative by Design |
| designr | Balanced Factorial Designs |
| designsize | Sample Size Calculation of Various Study Designs |
| desiR | Desirability Functions for Ranking, Selecting, and Integrating Data |
| desirability | Function Optimization and Ranking via Desirability Functions |
| desirability2 | Desirability Functions for Multiparameter Optimization |
| desk | Didactic Econometrics Starter Kit |
| desla | Desparsified Lasso Inference for Time Series |
| deSolve | Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE') |
| despair | Motivational Quotes and Shakespearean Bard–bits for Personal Projects |
| desplot | Plotting Field Plans for Agricultural Experiments |
| details | Create Details HTML Tag for Markdown and Package Documentation |
| detect | Analyzing Wildlife Data with Detection Error |
| detectnorm | Detect Nonnormality in Meta-Analysis without Raw Data |
| detector | Detect Data Containing Personally Identifiable Information |
| detectors | Prediction Data from GPT Detectors |
| detectR | Change Point Detection |
| detectRUNS | Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes |
| detectseparation | Detect and Check for Separation and Infinite Maximum Likelihood Estimates |
| DetLifeInsurance | Life Insurance Premium and Reserves Valuation |
| DetMCD | Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter) |
| detourr | Portable and Performant Tour Animations |
| detpack | Density Estimation and Random Number Generation with Distribution Element Trees |
| DetR | Suite of Deterministic and Robust Algorithms for Linear Regression |
| detrendeR | A Graphical User Interface (GUI) to Visualize and Analyze Dendrochronological Data |
| detrendr | Detrend Images |
| deTS | Tissue-Specific Enrichment Analysis |
| detzrcr | Compare Detrital Zircon Suites |
| devEMF | EMF Graphics Output Device |
| devFunc | Clear and Condense Argument Check for User-Defined Functions |
| devoid | A Graphic Device that Does Nothing |
| Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |
| devRate | Quantify the Relationship Between Development Rate and Temperature in Ectotherms |
| devtools | Tools to Make Developing R Packages Easier |
| DevTreatRules | Develop Treatment Rules with Observational Data |
| DEXiR | 'DEXi' Library |
| dexter | Data Management and Analysis of Tests |
| dextergui | A Graphical User Interface for Dexter |
| dexterMST | CML and Bayesian Calibration of Multistage Tests |
| df2yaml | Convert Dataframe to 'YAML' |
| DFA | Detrended Fluctuation Analysis |
| DFA.CANCOR | Linear Discriminant Function and Canonical Correlation Analysis |
| dfadjust | Degrees of Freedom Adjustment for Robust Standard Errors |
| DFBA | Distribution-Free Bayesian Analysis |
| dfcomb | Phase I/II Adaptive Dose-Finding Design for Combination Studies |
| dfCompare | Compare Two Dataframes and Return Adds, Changes, and Deletes |
| dfcrm | Dose-Finding by the Continual Reassessment Method |
| DFD | Extract Drugs from Differential Expression Data from LINCS Database |
| dfdr | Automatic Differentiation of Simple Functions |
| dfexpand | Automatically Expand Delimited Column Values into Multiple Binary Columns with 'dfexpand' |
| dfidx | Indexed Data Frames |
| DFIT | Differential Functioning of Items and Tests |
| dfmeta | Meta-Analysis of Phase I Dose-Finding Early Clinical Trials |
| dfmirroR | Simulate a Data Frame Mirroring an Input and Produce Shareable Simulation Code |
| dfms | Dynamic Factor Models |
| dfmta | Phase I/II Adaptive Dose-Finding Design for MTA |
| dfoliatR | Detection and Analysis of Insect Defoliation Signals in Tree Rings |
| dfoptim | Derivative-Free Optimization |
| Dforest | Decision Forest |
| dformula | Data Manipulation using Formula |
| dfped | Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies |
| dfphase1 | Phase I Control Charts (with Emphasis on Distribution-Free Methods) |
| dfr | Dual Feature Reduction for SGL |
| dfrr | Dichotomized Functional Response Regression |
| dfsaneacc | Accelerated Derivative-Free Method for Large-Scale Nonlinear Systems of Equations |
| dfvad | Diewert and Fox's Method of Value Added Growth Decomposition |
| dga | Capture-Recapture Estimation using Bayesian Model Averaging |
| dGAselID | Genetic Algorithm with Incomplete Dominance for Feature Selection |
| DGEAR | Differential Gene Expression Analysis with R |
| DGEobj | Differential Gene Expression (DGE) Analysis Results Data Object |
| DGEobj.utils | Differential Gene Expression (DGE) Analysis Utility Toolkit |
| dggridR | Discrete Global Grids |
| dglars | Differential Geometric Least Angle Regression |
| dglm | Double Generalized Linear Models |
| DGLMExtPois | Double Generalized Linear Models Extending Poisson Regression |
| DGM | Dynamic Graphical Models |
| dgof | Discrete Goodness-of-Fit Tests |
| DGP4LCF | Dependent Gaussian Processes for Longitudinal Correlated Factors |
| dgpsi | Interface to 'dgpsi' for Deep and Linked Gaussian Process Emulations |
| dgumbel | The Gumbel Distribution Functions and Gradients |
| DHARMa | Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models |
| DHBins | Hexmaps for NZ District Health Boards |
| dhga | Differential Hub Gene Analysis |
| dhglm | Double Hierarchical Generalized Linear Models |
| dhh | A Heavy-Headed Distribution |
| dhlabR | National Library of Norway Quantitative Text Data API Tools |
| DHS.rates | Calculates Demographic Indicators |
| dhsage | Reproductive Age Female Data of Various Demographic Health Surveys |
| dHSIC | Independence Testing via Hilbert Schmidt Independence Criterion |
| di | Deficit Index (DI) |
| diagis | Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling |
| diagL1 | Routines for Fit, Inference and Diagnostics in Linear L1 and LAD Models |
| diagmeta | Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints |
| diagonals | Block Diagonal Extraction or Replacement |
| diagram | Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams |
| DiagrammeR | Graph/Network Visualization |
| DiagrammeRsvg | Export DiagrammeR Graphviz Graphs as SVG |
| DiallelAnalysisR | Diallel Analysis with R |
| dialr | Parse, Format, and Validate International Phone Numbers |
| dialrjars | Required 'libphonenumber' jars for the 'dialr' Package |
| dials | Tools for Creating Tuning Parameter Values |
| diaplt | Beads Summary Plot of Ranges |
| diathor | Calculate Ecological Information and Diatom Based Indices |
| dibble | Dimensional Data Frames |
| dice | Calculate probabilities of various dice-rolling events |
| DiceDesign | Designs of Computer Experiments |
| DiceEval | Construction and Evaluation of Metamodels |
| DiceKriging | Kriging Methods for Computer Experiments |
| DICEM | Directness and Intensity of Conflict Expression |
| DiceOptim | Kriging-Based Optimization for Computer Experiments |
| diceR | Diverse Cluster Ensemble in R |
| DiceView | Methods for Visualization of Computer Experiments Design and Surrogate |
| dichromat | Color Schemes for Dichromats |
| DICOMread | Reading and Saving DICOM Image Files |
| DIconvex | Finding Patterns of Monotonicity and Convexity in Data |
| Dict | R6 Based Key-Value Dictionary Implementation |
| dictionar6 | R6 Dictionary Interface |
| dictionaRy | Retrieve the Dictionary Definitions of English Words |
| did | Treatment Effects with Multiple Periods and Groups |
| did2s | Two-Stage Difference-in-Differences Following Gardner (2021) |
| DidacticBoost | A Simple Implementation and Demonstration of Gradient Boosting |
| didec | Directed Dependence Coefficient |
| Diderot | Bibliographic Network Analysis |
| DiDforBigData | A Big Data Implementation of Difference-in-Differences Estimation with Staggered Treatment |
| DIDHAD | Difference-in-Differences in Heterogeneous Adoption Designs with Quasi Stayers |
| didimputation | Imputation Estimator from Borusyak, Jaravel, and Spiess (2021) |
| DIDmultiplegt | Estimators DID with Multiple Groups and Periods |
| DIDmultiplegtDYN | Estimation in Difference-in-Difference Designs with Multiple Groups and Periods |
| didrooRFM | Compute Recency Frequency Monetary Scores for your Customer Data |
| diemr | Diagnostic Index Expectation Maximisation in R |
| dietr | Diet Estimated Trophic Levels |
| diezeit | R Interface to the ZEIT ONLINE Content API |
| DIFboost | Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques |
| difconet | Differential Coexpressed Networks |
| diffcor | Fisher's z-Tests Concerning Differences Between Correlations |
| DiffCorr | Analyzing and Visualizing Differential Correlation Networks in Biological Data |
| diffdf | Dataframe Difference Tool |
| diffdfs | Compute the Difference Between Data Frames |
| diffee | Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure |
| diffEnrich | Given a List of Gene Symbols, Performs Differential Enrichment Analysis |
| diffeqr | Solving Differential Equations (ODEs, SDEs, DDEs, DAEs) |
| diffeR | Metrics of Difference for Comparing Pairs of Maps or Pairs of Variables |
| diffeRenTES | Computation of TES-Based Cell Differentiation Trees |
| diffIRT | Diffusion IRT Models for Response and Response Time Data |
| diffmatchpatch | String Diff, Match, and Patch Utilities |
| DiffNet | Identifying Significant Node Scores using Network Diffusion Algorithm |
| diffobj | Diffs for R Objects |
| diffpriv | Easy Differential Privacy |
| diffr | Display Differences Between Two Files using Codediff Library |
| diffudist | Diffusion Distance for Complex Networks |
| diffusion | Forecast the Diffusion of New Products |
| diffusionMap | Diffusion Map |
| diffval | Vegetation Patterns |
| diffviewer | HTML Widget to Show File Differences |
| DiffXTables | Pattern Analysis Across Contingency Tables |
| DIFlasso | A Penalty Approach to Differential Item Functioning in Rasch Models |
| DIFM | Dynamic ICAR Spatiotemporal Factor Models |
| difNLR | DIF and DDF Detection by Non-Linear Regression Models |
| DIFplus | Multilevel Mantel-Haenszel Statistics for Differential Item Functioning Detection |
| difR | Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF) |
| DIFshiny | Differential Item Functioning via Shiny Application |
| DIFtree | Item Focussed Trees for the Identification of Items in Differential Item Functioning |
| digest | Create Compact Hash Digests of R Objects |
| digiRhythm | Analyzing Animal's Rhythmicity |
| digitalPCR | Estimate Copy Number for Digital PCR |
| digitize | Use Data from Published Plots in R |
| digitTests | Tests for Detecting Irregular Digit Patterns |
| DIGSS | Determination of Intervals Using Georeferenced Survey Simulation |
| dilp | Reconstruct Paleoclimate and Paleoecology with Leaf Physiognomy |
| DIME | Differential Identification using Mixture Ensemble |
| dimensio | Multivariate Data Analysis |
| dimensionsR | Gathering Bibliographic Records from 'Digital Science Dimensions' Using 'DSL' API |
| DImodels | Diversity-Interactions (DI) Models |
| DImodelsMulti | Fit Multivariate Diversity-Interactions Models with Repeated Measures |
| DImodelsVis | Visualising and Interpreting Statistical Models Fit to Compositional Data |
| DIMORA | Diffusion Models R Analysis |
| dimRed | A Framework for Dimensionality Reduction |
| dina | Bayesian Estimation of DINA Model |
| dinamic | A Method to Analyze Recurrent DNA Copy Number Aberrations in Tumors |
| DiNAMIC.Duo | Finding Recurrent DNA Copy Number Alterations and Differences |
| dineq | Decomposition of (Income) Inequality |
| dineR | Differential Network Estimation in R |
| dint | A Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates |
| DiPALM | Differential Pattern Analysis via Linear Modeling |
| DiPhiSeq | Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data |
| dipm | Depth Importance in Precision Medicine (DIPM) Method |
| DiPs | Directional Penalties for Optimal Matching in Observational Studies |
| dipsaus | A Dipping Sauce for Data Analysis and Visualizations |
| diptest | Hartigan's Dip Test Statistic for Unimodality - Corrected |
| dipw | Debiased Inverse Propensity Score Weighting |
| Dire | Linear Regressions with a Latent Outcome Variable |
| DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |
| DirectedClustering | Directed Weighted Clustering Coefficient |
| DirectEffects | Estimating Controlled Direct Effects for Explaining Causal Findings |
| Directional | A Collection of Functions for Directional Data Analysis |
| directlabels | Direct Labels for Multicolor Plots |
| directotree | Creates an Interactive Tree Structure of a Directory |
| directPA | Direction Analysis for Pathways and Kinases |
| DirectStandardisation | Adjusted Means and Proportions by Direct Standardisation |
| dirichletprocess | Build Dirichlet Process Objects for Bayesian Modelling |
| DirichletReg | Dirichlet Regression |
| dirmcmc | Directional Metropolis Hastings Algorithm |
| dirmult | Estimation in Dirichlet-Multinomial Distribution |
| DirStats | Nonparametric Methods for Directional Data |
| dirttee | Distributional Regression for Time to Event Data |
| disaggR | Two-Steps Benchmarks for Time Series Disaggregation |
| DisaggregateTS | High-Dimensional Temporal Disaggregation |
| disaggregation | Disaggregation Modelling |
| disastr.api | Wrapper for the UN OCHA ReliefWeb Disaster Events API |
| disbayes | Bayesian Multi-State Modelling of Chronic Disease Burden Data |
| discAUC | Linear and Non-Linear AUC for Discounting Data |
| DIscBIO | A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics |
| discFA | Discrete Factor Analysis |
| discfrail | Cox Models for Time-to-Event Data with Nonparametric Discrete Group-Specific Frailties |
| discharge | Fourier Analysis of Discharge Data |
| disclap | Discrete Laplace Exponential Family |
| disclapmix | Discrete Laplace Mixture Inference using the EM Algorithm |
| disclapmix2 | Mixtures of Discrete Laplace Distributions using Numerical Optimisation |
| disclosuR | Text Conversion from Nexis Uni PDFs to R Data Frames |
| discnorm | Test for Discretized Normality in Ordinal Data |
| discord | Functions for Discordant Kinship Modeling |
| DiSCos | Distributional Synthetic Controls Estimation |
| discourseGT | Analyze Group Patterns using Graph Theory in Educational Settings |
| discoveR | Exploratory Data Analysis System |
| discoverableresearch | Checks Title, Abstract and Keywords to Optimise Discoverability |
| DiscreteDatasets | Example Data Sets for Use with Discrete Statistical Tests |
| DiscreteDists | Discrete Statistical Distributions |
| DiscreteFDR | FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests |
| discretefit | Simulated Goodness-of-Fit Tests for Discrete Distributions |
| DiscreteInverseWeibull | Discrete Inverse Weibull Distribution |
| DiscreteLaplace | Discrete Laplace Distributions |
| DiscreteQvalue | Improved q-Values for Discrete Uniform and Homogeneous Tests |
| DiscreteTests | Vectorised Computation of P-Values and Their Supports for Several Discrete Statistical Tests |
| DiscreteWeibull | Discrete Weibull Distributions (Type 1 and 3) |
| discretization | Data Preprocessing, Discretization for Classification |
| discrim | Model Wrappers for Discriminant Analysis |
| discrtr | A Companion Package for the Book "Discrete Choice Analysis with 'R'" |
| discSurv | Discrete Time Survival Analysis |
| discursive | Measuring Discursive Sophistication in Open-Ended Survey Responses |
| disdat | Data for Comparing Species Distribution Modeling Methods |
| diseasemapping | Modelling Spatial Variation in Disease Risk for Areal Data |
| diseasystore | Feature Stores for the 'diseasy' Framework |
| DisHet | Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples |
| DisimForMixed | Calculate Dissimilarity Matrix for Dataset with Mixed Attributes |
| DisImpact | Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups |
| disk.frame | Larger-than-RAM Disk-Based Data Manipulation Framework |
| dismo | Species Distribution Modeling |
| disordR | Non-Ordered Vectors |
| disparityfilter | Disparity Filter Algorithm for Weighted Networks |
| dispeRse | Simulation of Demic Diffusion with Environmental Constraints |
| dispmod | Modelling Dispersion in GLM |
| disposables | Create Disposable R Packages for Testing |
| dispositionEffect | Analysis of Disposition Effect on Financial Portfolios |
| dispRity | Measuring Disparity |
| disprofas | Non-Parametric Dissolution Profile Analysis |
| disprose | Discriminating Probes Selection |
| dissCqN | Multiple Assemblage Dissimilarity for Orders q = 0-N |
| dissever | Spatial Downscaling using the Dissever Algorithm |
| DiSSMod | Fitting Sample Selection Models for Discrete Response Variables |
| Distance | Distance Sampling Detection Function and Abundance Estimation |
| distances | Tools for Distance Metrics |
| distanceto | Calculate Distance to Features |
| distantia | Assessing Dissimilarity Between Multivariate Time Series |
| DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |
| distcomp | Computations over Distributed Data without Aggregation |
| distcrete | Discrete Distribution Approximations |
| distdichoR | Distributional Method for the Dichotomisation of Continuous Outcomes |
| distfree.cr | Distribution-Free Confidence Region |
| distfromq | Reconstruct a Distribution from a Collection of Quantiles |
| distill | 'R Markdown' Format for Scientific and Technical Writing |
| distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |
| distillML | Model Distillation and Interpretability Methods for Machine Learning Models |
| distinctiveness | Distinctiveness Centrality |
| disto | Unified Interface to Distance, Dissimilarity, Similarity Matrices |
| distops | Usual Operations for Distance Matrices in R |
| distory | Distance Between Phylogenetic Histories |
| DistPlotter | A Graphical User Interface for Plotting Common Univariate Distributions |
| distr | Object Oriented Implementation of Distributions |
| distrDoc | Documentation for 'distr' Family of R Packages |
| distreg.vis | Framework for the Visualization of Distributional Regression Models |
| distrEllipse | S4 Classes for Elliptically Contoured Distributions |
| distrEx | Extensions of Package 'distr' |
| DISTRIB | Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach |
| Distributacalcul | Probability Distribution Functions |
| distributional | Vectorised Probability Distributions |
| DistributionOptimization | Distribution Optimization |
| distributions3 | Probability Distributions as S3 Objects |
| distributionsrd | Distribution Fitting and Evaluation |
| DistributionTest | Powerful Goodness-of-Fit Tests Based on the Likelihood Ratio |
| DistributionUtils | Distribution Utilities |
| distrMod | Object Oriented Implementation of Probability Models |
| distro | Linux Distribution Properties |
| distrom | Distributed Multinomial Regression |
| distrr | Estimate and Manage Empirical Distributions |
| distrRmetrics | Distribution Classes for Distributions from Rmetrics |
| distrSim | Simulation Classes Based on Package 'distr' |
| distrTeach | Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School |
| distrTEst | Estimation and Testing Classes Based on Package 'distr' |
| distTails | A Collection of Full Defined Distribution Tails |
| disttools | Distance Object Manipulation Tools |
| dittodb | A Test Environment for Database Requests |
| dittoViz | User Friendly Data Visualization |
| div | Report on Diversity and Inclusion in a Corporate Setting |
| divDyn | Diversity Dynamics using Fossil Sampling Data |
| DivE | Diversity Estimator |
| diveMove | Dive Analysis and Calibration |
| diveR | Easily Install and Load Interactive Data Visualization Tools |
| diverge | Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages |
| diverse | Diversity Measures for Complex Systems |
| DiversificationR | Econometric Tools to Measure Portfolio Diversification |
| diversitree | Comparative 'Phylogenetic' Analyses of Diversification |
| diversityForest | Innovative Complex Split Procedures in Random Forests Through Candidate Split Sampling |
| divest | Get Images Out of DICOM Format Quickly |
| divo | Tools for Analysis of Diversity and Similarity in Biological Systems |
| divraster | Diversity Metrics Calculations for Rasterized Data |
| divseg | Calculate Diversity and Segregation Indices |
| divvy | Spatial Subsampling of Biodiversity Occurrence Data |
| dixon | Nearest Neighbour Contingency Table Analysis |
| dixonTest | Dixon's Ratio Test for Outlier Detection |
| diyar | Record Linkage and Epidemiological Case Definitions in 'R' |
| DIZtools | Lightweight Utilities for 'DIZ' R Package Development |
| DIZutils | Utilities for 'DIZ' R Package Development |
| DJL | Distance Measure Based Judgment and Learning |
| dkanr | Client for the 'DKAN' API |
| dLagM | Time Series Regression Models with Distributed Lag Models |
| DLASSO | Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models |
| dlbayes | Use Dirichlet Laplace Prior to Solve Linear Regression Problem and Do Variable Selection |
| DLEGFM | Distributed Loading Estimation for General Factor Model |
| dlib | Allow Access to the 'Dlib' C++ Library |
| dlim | Distributed Lag Interaction Model |
| DLL | Decorrelated Local Linear Estimator |
| dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |
| DLMtool | Data-Limited Methods Toolkit |
| dlmtree | Bayesian Treed Distributed Lag Models |
| dlnm | Distributed Lag Non-Linear Models |
| dlookr | Tools for Data Diagnosis, Exploration, Transformation |
| DLPCA | The Distributed Local PCA Algorithm |
| dlr | Download and Cache Files Safely |
| dlsem | Distributed-Lag Linear Structural Equation Models |
| dlstats | Download Stats of R Packages |
| dm | Relational Data Models |
| dma | Dynamic Model Averaging |
| dmai | Divisia Monetary Aggregates Index |
| dmbc | Model Based Clustering of Binary Dissimilarity Measurements |
| DMCfun | Diffusion Model of Conflict (DMC) in Reaction Time Tasks |
| dmetatools | Computational Tools for Meta-Analysis of Diagnostic Accuracy Test |
| dml | Distance Metric Learning in R |
| dmlalg | Double Machine Learning Algorithms |
| dmm | Dyadic Mixed Model for Pedigree Data |
| DMMF | Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model |
| dMod | Dynamic Modeling and Parameter Estimation in ODE Models |
| DMQ | Dynamic Multiple Quantile (DMQ) Model |
| dmri.tracking | DiST - Diffusion Direction Smoothing and Tracking |
| DMRnet | Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data |
| DMtest | Differential Methylation Tests (DMtest) |
| DMTL | Tools for Applying Distribution Mapping Based Transfer Learning |
| dmtools | Tools for Clinical Data Management |
| dmutate | Mutate Data Frames with Random Variates |
| DMwR2 | Functions and Data for the Second Edition of "Data Mining with R" |
| DNAmixturesLite | Statistical Inference for Mixed Traces of DNA (Lite-Version) |
| DNAmotif | DNA Sequence Motifs |
| DNAseqtest | Generating and Testing DNA Sequences |
| DNAtools | Tools for Analysing Forensic Genetic DNA Data |
| dndR | Dungeons & Dragons Functions for Players and Dungeon Masters |
| DNetFinder | Estimating Differential Networks under Semiparametric Gaussian Graphical Models |
| dng | Distributions and Gradients |
| DNH4 | Crawling for Daum News Text |
| DNLC | Differential Network Local Consistency Analysis |
| DNMF | Discriminant Non-Negative Matrix Factorization |
| dnn | Deep Neural Network Tools for Probability and Statistic Models |
| dnr | Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family |
| do | Data Operator |
| do3PCA | Probabilistic Phylogenetic Principal Component Analysis |
| dobin | Dimension Reduction for Outlier Detection |
| dobson | Data from the GLM Book by Dobson and Barnett |
| doBy | Groupwise Statistics, LSmeans, Linear Estimates, Utilities |
| doc2concrete | Measuring Concreteness in Natural Language |
| doc2vec | Distributed Representations of Sentences, Documents and Topics |
| dockerfiler | Easy Dockerfile Creation from R |
| DockerParallel | Using the Docker Container to Create R Workers on Local or Cloud Platform |
| docket | Insert R Data into 'Word' Documents |
| docknitr | Use Docker Images to Process Rmarkdown Blocks |
| doconv | Document Conversion to 'PDF' or 'PNG' |
| docopt | Command-Line Interface Specification Language |
| docopulae | Optimal Designs for Copula Models |
| docore | Utility Functions for Scientific Coding |
| docstring | Provides Docstring Capabilities to R Functions |
| doctest | Generate Tests from Examples Using 'roxygen' and 'testthat' |
| document | Run 'roxygen2' on (Chunks of) Single Code Files |
| documenter | Documents Files |
| docuSignr | Connect to 'DocuSign' API |
| docxtractr | Extract Data Tables and Comments from 'Microsoft' 'Word' Documents |
| Dodge | Acceptance Sampling Ideas Originated by H.F. Dodge |
| dodgr | Distances on Directed Graphs |
| DoE.base | Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages |
| DoE.MIParray | Creation of Arrays by Mixed Integer Programming |
| DoE.wrapper | Wrapper Package for Design of Experiments Functionality |
| doebioresearch | Analysis of Design of Experiments for Biological Research |
| DOEM | The Distributed Online Expectation Maximization Algorithms to Solve Parameters of Poisson Mixture Models |
| DoEstRare | Rare Variant Association Test Based on Position Density Estimation |
| doex | The One-Way Heteroscedastic ANOVA Tests |
| doFuture | Use Foreach to Parallelize via the Future Framework |
| dogesr | Work with the Doges/Dogaresse Dataset |
| doMC | Foreach Parallel Adaptor for 'parallel' |
| dominanceanalysis | Dominance Analysis |
| domino | R Console Bindings for the 'Domino Command-Line Client' |
| DominoDataR | 'Domino Data R SDK' |
| domir | Tools to Support Relative Importance Analysis |
| doMPI | Foreach Parallel Adaptor for the Rmpi Package |
| donut | Nearest Neighbour Search with Variables on a Torus |
| donutsk | Construct Advanced Donut Charts |
| doofa | Designs for Order-of-Addition Experiments |
| doolkit | Exploration of Dental Surface Topography |
| doParallel | Foreach Parallel Adaptor for the 'parallel' Package |
| DOPE | Drug Ontology Parsing Engine |
| doRedis | 'Foreach' Parallel Adapter Using the 'Redis' Database |
| doremi | Dynamics of Return to Equilibrium During Multiple Inputs |
| doRNG | Generic Reproducible Parallel Backend for 'foreach' Loops |
| DOS | Design of Observational Studies |
| DOS2 | Design of Observational Studies, Companion to the Second Edition |
| dosearch | Causal Effect Identification from Multiple Incomplete Data Sources |
| dosedesignR | Interactive Designing of Dose Finding Studies |
| DoseFinding | Planning and Analyzing Dose Finding Experiments |
| doseminer | Extract Drug Dosages from Free-Text Prescriptions |
| doseSens | Conduct Sensitivity Analysis with Continuous Exposures and Binary Outcomes |
| doSNOW | Foreach Parallel Adaptor for the 'snow' Package |
| DOSPortfolio | Dynamic Optimal Shrinkage Portfolio |
| dosresmeta | Multivariate Dose-Response Meta-Analysis |
| dostats | Compute Statistics Helper Functions |
| DOT | Render and Export DOT Graphs in R |
| dotCall64 | Enhanced Foreign Function Interface Supporting Long Vectors |
| dotenv | Load Environment Variables from '.env' |
| dotgen | Gene-Set Analysis via Decorrelation by Orthogonal Transformation |
| dotprofile | Create and Manage Configuration Profiles |
| dots | Dot Density Maps |
| dotsViolin | Dot Plots Mimicking Violin Plots |
| dotty | The Unpacking Dot Operator |
| dotwhisker | Dot-and-Whisker Plots of Regression Results |
| doubcens | Survivor Function Estimation for Doubly Interval-Censored Failure Time Data |
| double.truncation | Analysis of Doubly-Truncated Data |
| DoubleCone | Test Against Parametric Regression Function |
| DoubleExpSeq | Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter |
| DoubleML | Double Machine Learning in R |
| doublIn | Estimate Incubation or Latency Time using Doubly Interval Censored Observations |
| doubt | Enable Operators Containing the '?' Symbol |
| douconca | Double Constrained Correspondence Analysis for Trait-Environment Analysis in Ecology |
| doudpackage | Create Elegant Table 1 in HTML for Bio-Statistics |
| DOvalidation | Kernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation |
| DOVE | Durability of Vaccine Efficacy |
| Dowd | Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk |
| downlit | Syntax Highlighting and Automatic Linking |
| downloader | Download Files over HTTP and HTTPS |
| downloadthis | Implement Download Buttons in 'rmarkdown' |
| downscale | Downscaling Species Occupancy |
| downsize | A Tool to Downsize Large Analysis Projects for Testing |
| dowser | B Cell Receptor Phylogenetics Toolkit |
| DOYPAColors | Don't Overthink Your Palette of Colors |
| dparser | Port of 'Dparser' Package |
| dpasurv | Dynamic Path Analysis of Survival Data via Aalen's Additive Hazards Model |
| DPBBM | Dirichlet Process Beta-Binomial Mixture |
| dpcc | Dynamic Programming for Convex Clustering |
| dPCP | Automated Analysis of Multiplex Digital PCR Data |
| Dpit | Distribution Pitting |
| dplR | Dendrochronology Program Library in R |
| dplyr | A Grammar of Data Manipulation |
| dplyrAssist | RStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr' |
| dpm | Dynamic Panel Models Fit with Maximum Likelihood |
| dpmr | Data Package Manager for R |
| DPP | Inference of Parameters of Normal Distributions from a Mixture of Normals |
| DPpack | Differentially Private Statistical Analysis and Machine Learning |
| dppmix | Determinantal Point Process Mixture Models |
| DPQ | Density, Probability, Quantile ('DPQ') Computations |
| DPQmpfr | DPQ (Density, Probability, Quantile) Distribution Computations using MPFR |
| dprop | Computation of Some Important Distributional Properties |
| dpseg | Piecewise Linear Segmentation by Dynamic Programming |
| DPTM | Dynamic Panel Multiple Threshold Model with Fixed Effects |
| DPtree | Dirichlet-Based Polya Tree |
| DQAgui | Graphical User Interface for Data Quality Assessment |
| DQAstats | Core Functions for Data Quality Assessment |
| dqrng | Fast Pseudo Random Number Generators |
| dQTG.seq | A BSA Software for Detecting All Types of QTLs in BC, DH, RIL and F2 |
| dr | Methods for Dimension Reduction for Regression |
| DR.SC | Joint Dimension Reduction and Spatial Clustering |
| dr4pl | Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model |
| dracor | Decode Draco Format 3D Mesh Data |
| dragonking | Statistical Tools to Identify Dragon Kings |
| dragracer | Data Sets for RuPaul's Drag Race |
| dragulaR | Drag and Drop Elements in 'Shiny' using 'Dragula Javascript Library' |
| drake | A Pipeline Toolkit for Reproducible Computation at Scale |
| DramaAnalysis | Analysis of Dramatic Texts |
| drape | Doubly Robust Average Partial Effects |
| drat | 'Drat' R Archive Template |
| draw | Wrapper Functions for Producing Graphics |
| drawer | An Interactive HTML Image Editing Tool |
| DRaWR | Discriminative Random Walk with Restart |
| drawsample | Draw Samples with the Desired Properties from a Data Set |
| DRAYL | Computation of Rayleigh Densities of Arbitrary Dimension |
| DrBats | Data Representation: Bayesian Approach That's Sparse |
| drc | Analysis of Dose-Response Curves |
| drcarlate | Improving Estimation Efficiency in CAR with Imperfect Compliance |
| drclust | Simultaneous Clustering and (or) Dimensionality Reduction |
| drcSeedGerm | Utilities for Data Analyses in Seed Germination/Emergence Assays |
| drcte | Statistical Approaches for Time-to-Event Data in Agriculture |
| drda | Dose-Response Data Analysis |
| DRDID | Doubly Robust Difference-in-Differences Estimators |
| DrDimont | Drug Response Prediction from Differential Multi-Omics Networks |
| DRDRtest | A Nonparametric Doubly Robust Test for Continuous Treatment Effect |
| dreamer | Dose Response Models for Bayesian Model Averaging |
| dreamerr | Error Handling Made Easy |
| DREGAR | Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR) |
| drf | Distributional Random Forests |
| drgee | Doubly Robust Generalized Estimating Equations |
| drglm | Fitting Linear and Generalized Linear Models in "Divide and Recombine" Approach to Large Data Sets |
| DRHotNet | Differential Risk Hotspots in a Linear Network |
| drhur | Learning R with Dr. Hu |
| DriftBurstHypothesis | Calculates the Test-Statistic for the Drift Burst Hypothesis |
| drifter | Concept Drift and Concept Shift Detection for Predictive Models |
| DrillR | R Driver for Apache Drill |
| drimmR | Estimation, Simulation and Reliability of Drifting Markov Models |
| DrImpute | Imputing Dropout Events in Single-Cell RNA-Sequencing Data |
| DRIP | Discontinuous Regression and Image Processing |
| driveR | Prioritizing Cancer Driver Genes Using Genomics Data |
| droll | Analyze Roll Distributions |
| DRomics | Dose Response for Omics |
| dropout | Handling Incomplete Responses in Survey Data Analysis |
| dropR | Dropout Analysis by Condition |
| droptest | Simulates LOX Drop Testing |
| drord | Doubly-Robust Estimators for Ordinal Outcomes |
| drought | Statistical Modeling and Assessment of Drought |
| drpop | Efficient and Doubly Robust Population Size Estimation |
| DRquality | Quality Measurements for Dimensionality Reduction |
| DRR | Dimensionality Reduction via Regression |
| drtmle | Doubly-Robust Nonparametric Estimation and Inference |
| drugDemand | Drug Demand Forecasting |
| drugdevelopR | Utility-Based Optimal Phase II/III Drug Development Planning |
| DrugExposureDiagnostics | Diagnostics for OMOP Common Data Model Drug Records |
| drugprepr | Prepare Electronic Prescription Record Data to Estimate Drug Exposure |
| DrugSim2DR | Predict Drug Functional Similarity to Drug Repurposing |
| DrugUtilisation | Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model |
| drumr | Turn R into a Drum Machine |
| DRviaSPCN | Drug Repurposing in Cancer via a Subpathway Crosstalk Network |
| ds | Descriptive Statistics |
| ds4psy | Data Science for Psychologists |
| dsa | Seasonal Adjustment of Daily Time Series |
| DSAIDE | Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution) |
| DSAIRM | Dynamical Systems Approach to Immune Response Modeling |
| DSAM | Data Splitting Algorithms for Model Developments |
| dsample | Discretization-Based Direct Random Sample Generation |
| dsb | Normalize & Denoise Droplet Single Cell Protein Data (CITE-Seq) |
| DSBayes | Bayesian Subgroup Analysis in Clinical Trials |
| dscore | D-Score for Child Development |
| dsdp | Density Estimation with Semidefinite Programming |
| dsem | Fit Dynamic Structural Equation Models |
| DSI | 'DataSHIELD' Interface |
| dsims | Distance Sampling Simulations |
| DSjobtracker | What Skills and Qualifications are Required for Data Science Related Jobs? |
| DSL | Distributed Storage and List |
| dslabs | Data Science Labs |
| dsld | Data Science Looks at Discrimination |
| dslice | Dynamic Slicing |
| DSLite | 'DataSHIELD' Implementation on Local Datasets |
| dsm | Density Surface Modelling of Distance Sampling Data |
| dsmisc | Data Science Box of Pandora Miscellaneous |
| dsmmR | Estimation and Simulation of Drifting Semi-Markov Models |
| DSMolgenisArmadillo | 'DataSHIELD' Client for 'MOLGENIS Armadillo' |
| dsmSearch | DSM and LiDAR downloader |
| DSOpal | 'DataSHIELD' Implementation for 'Opal' |
| dsos | Dataset Shift with Outlier Scores |
| DSpoty | Get 'Spotify' API Multiple Information |
| dsrTest | Tests and Confidence Intervals on Directly Standardized Rates for Several Methods |
| DSSAT | A Comprehensive R Interface for the DSSAT Cropping Systems Model |
| dssd | Distance Sampling Survey Design |
| DSSP | Implementation of the Direct Sampling Spatial Prior |
| dst | Using the Theory of Belief Functions |
| dstabledist | The Discrete Stable Distribution Functions |
| DstarM | Analyze Two Choice Reaction Time Data with the D*M Method |
| dstat | Conditional Sensitivity Analysis for Matched Observational Studies |
| dstat2x2xk | Demonstrated Insensitivity to Bias in 2x2xK Contingency Tables |
| dSTEM | Multiple Testing of Local Extrema for Detection of Change Points |
| dSVA | Direct Surrogate Variable Analysis |
| DSWE | Data Science for Wind Energy |
| DT | A Wrapper of the JavaScript Library 'DataTables' |
| Dtableone | Tabular Comparison of Paired Diagnostic Tests |
| dtangle | Cell Type Deconvolution from Gene Expressions |
| DTAplots | Creates Plots Accompanying Bayesian Diagnostic Test Accuracy Meta-Analyses |
| DTAT | Dose Titration Algorithm Tuning |
| DTAXG | Diagnostic Test Assessment in the Absence of Gold Standard |
| dTBM | Multi-Way Spherical Clustering via Degree-Corrected Tensor Block Models |
| dtComb | Statistical Combination of Diagnostic Tests |
| DTComPair | Comparison of Binary Diagnostic Tests in a Paired Study Design |
| DtD | Distance to Default |
| DTDA | Doubly Truncated Data Analysis |
| DTDA.cif | Doubly Truncated Data Analysis, Cumulative Incidence Functions |
| DTDA.ni | Doubly Truncated Data Analysis, Non Iterative |
| dtgiw | Discrete Transmuted Generalized Inverse Weibull Distribution |
| dti | Analysis of Diffusion Weighted Imaging (DWI) Data |
| dtmapi | Fetching Data from the 'Displacement Tracking Matrix' |
| DTMCPack | Suite of Functions Related to Discrete-Time Discrete-State Markov Chains |
| dtp | Dynamic Panel Threshold Model |
| dtpcrm | Dose Transition Pathways for Continual Reassessment Method |
| dtplyr | Data Table Back-End for 'dplyr' |
| dtrackr | Track your Data Pipelines |
| dtreg | Interact with Data Type Registries and Create Machine-Readable Data |
| DTRKernSmooth | Estimate and Make Inference About Optimal Treatment Regimes via Smoothed Methods |
| DTRlearn2 | Statistical Learning Methods for Optimizing Dynamic Treatment Regimes |
| DTRreg | DTR Estimation and Inference via G-Estimation, Dynamic WOLS, Q-Learning, and Dynamic Weighted Survival Modeling (DWSurv) |
| dtrSurv | Dynamic Treatment Regimes for Survival Analysis |
| DTSEA | Drug Target Set Enrichment Analysis |
| DTSg | A Class for Working with Time Series Data Based on 'data.table' and 'R6' with Largely Optional Reference Semantics |
| dtt | Discrete Trigonometric Transforms |
| dttr2 | Manipulate Date, POSIXct and hms Vectors |
| dtts | 'data.table' Time-Series |
| dtw | Dynamic Time Warping Algorithms |
| DTWBI | Imputation of Time Series Based on Dynamic Time Warping |
| dtwclust | Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance |
| DTwrappers | Simplified Data Analysis with Wrapper Functions for the 'Data.Table' Package |
| DTwrappers2 | Extensions of 'DTwrappers' |
| DTWUMI | Imputation of Multivariate Time Series Based on Dynamic Time Warping |
| dual | Automatic Differentiation with Dual Numbers |
| dualScale | Dual Scaling Analysis of Data |
| dualtrees | Decimated and Undecimated 2D Complex Dual-Tree Wavelet Transform |
| duawranglr | Securely Wrangle Dataset According to Data Usage Agreement |
| dub | Unpacking Assignment for Lists via Pattern Matching |
| duckdb | DBI Package for the DuckDB Database Management System |
| duckdbfs | High Performance Remote File System, Database and 'Geospatial' Access Using 'duckdb' |
| duckduckr | Simple Client for the DuckDuckGo Instant Answer API |
| duckplyr | A 'DuckDB'-Backed Version of 'dplyr' |
| duke | Creating a Color-Blind Friendly Duke Color Package |
| dumbbell | Displaying Changes Between Two Points Using Dumbbell Plots |
| dummy | Automatic Creation of Dummies with Support for Predictive Modeling |
| dundermifflin | The Office Quotes on-Demand |
| dunlin | Preprocessing Tools for Clinical Trial Data |
| dunn.test | Dunn's Test of Multiple Comparisons Using Rank Sums |
| dupiR | Bayesian Inference from Count Data using Discrete Uniform Priors |
| dupNodes | Computes DNSLbetweenness, a Betweenness Measure that Includes Self-Loops |
| dupree | Identify Duplicated R Code in a Project |
| Durga | Effect Size Estimation and Visualisation |
| DVHmetrics | Analyze Dose-Volume Histograms and Check Constraints |
| dvir | Disaster Victim Identification |
| dvmisc | Convenience Functions, Moving Window Statistics, and Graphics |
| dvqcc | Dynamic VAR - Based Control Charts for Batch Process Monitoring |
| dwctaxon | Edit and Validate Darwin Core Taxon Data |
| DWDLargeR | Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination |
| dwdradar | Read Binary Radar Files from 'DWD' (German Weather Service) |
| DWLasso | Degree Weighted Lasso |
| dwlm | Doubly Weighted Linear Model |
| DWLS | Gene Expression Deconvolution Using Dampened Weighted Least Squares |
| dwp | Density-Weighted Proportion |
| DWreg | Parametric Regression for Discrete Response |
| dyads | Dyadic Network Analysis |
| dycdtools | Calibration Assistant and Post-Processing Tool for Aquatic Ecosystem Model DYRESM-CAEDYM |
| dydea | Detection of Chaotic and Regular Intervals in the Data |
| dygraphs | Interface to 'Dygraphs' Interactive Time Series Charting Library |
| Dykstra | Quadratic Programming using Cyclic Projections |
| DYM | Did You Mean? |
| DyMEP | Dynamic Multi Environment Phenology-Model |
| dymo | Dynamic Mode Decomposition for Multivariate Time Feature Prediction |
| dyn | Time Series Regression |
| dyn.log | Dynamic Logging for R Inspired by Configuration Driven Development |
| dynamac | Dynamic Simulation and Testing for Single-Equation ARDL Models |
| dynamAedes | A Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes |
| dynamic | DFI Cutoffs for Latent Variable Models |
| DynamicGP | Modelling and Analysis of Dynamic Computer Experiments |
| dynamicSDM | Species Distribution and Abundance Modelling at High Spatio-Temporal Resolution |
| dynamicTreeCut | Methods for Detection of Clusters in Hierarchical Clustering Dendrograms |
| dynamite | Bayesian Modeling and Causal Inference for Multivariate Longitudinal Data |
| DynaRankR | Inferring Longitudinal Dominance Hierarchies |
| DynareR | Bringing the Power of 'Dynare' to 'R', 'R Markdown', and 'Quarto' |
| dynaSpec | Dynamic Spectrogram Visualizations |
| DYNATE | Dynamic Aggregation Testing |
| dynatop | An Implementation of Dynamic TOPMODEL Hydrological Model in R |
| dynatopGIS | Algorithms for Helping Build Dynamic TOPMODEL Implementations from Spatial Data |
| dynaTree | Dynamic Trees for Learning and Design |
| dynBiplotGUI | Full Interactive GUI for Dynamic Biplot in R |
| DynClust | Denoising and Clustering for Dynamical Image Sequence (2D or 3D)+t |
| dyncomp | Complexity of Short and Coarse-Grained Time Series |
| dynConfiR | Dynamic Models for Confidence and Response Time Distributions |
| dynCorr | Dynamic Correlation Package |
| dyndimred | Dimensionality Reduction Methods in a Common Format |
| dynetNLAResistance | Resisting Neighbor Label Attack in a Dynamic Network |
| DynForest | Random Forest with Multivariate Longitudinal Predictors |
| dyngen | A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses |
| dynlm | Dynamic Linear Regression |
| dynmix | Estimation of Dynamic Finite Mixtures |
| DynNom | Visualising Statistical Models using Dynamic Nomograms |
| dynpanel | Dynamic Panel Data Models |
| dynparam | Creating Meta-Information for Parameters |
| dynpred | Companion Package to "Dynamic Prediction in Clinical Survival Analysis" |
| dynprog | Dynamic Programming Domain-Specific Language |
| dynr | Dynamic Models with Regime-Switching |
| dynRB | Dynamic Range Boxes |
| dynsim | Dynamic Simulations of Autoregressive Relationships |
| dynsurv | Dynamic Models for Survival Data |
| dyntaper | Dynamic Stem Profile Models, AKA Tree Taper Equations |
| DynTxRegime | Methods for Estimating Optimal Dynamic Treatment Regimes |
| dynutils | Common Functionality for the 'dynverse' Packages |
| dynwrap | Representing and Inferring Single-Cell Trajectories |
| dySEM | Dyadic Structural Equation Modeling |
| DysPIA | Dysregulated Pathway Identification Analysis |
| DysPIAData | Background and Pathway Data Used in 'DysPIA' |
| DySS | Dynamic Screening Systems |
| e1071 | Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien |
| E4tools | Management and Processing Tools for Data Produced by the Empatica E4 |
| eadrm | Fitting Dose-Response Models Using an Evolutionary Algorithm |
| eaf | Plots of the Empirical Attainment Function |
| Eagle | Multiple Locus Association Mapping on a Genome-Wide Scale |
| EAinference | Estimator Augmentation and Simulation-Based Inference |
| eAnalytics | Dynamic Web-Based Analytics for the Energy Industry |
| earlygating | Properties of Bayesian Early Gating Designs |
| earlyR | Estimation of Transmissibility in the Early Stages of a Disease Outbreak |
| earlywarnings | Early Warning Signals for Critical Transitions in Time Series |
| earth | Multivariate Adaptive Regression Splines |
| earthdatalogin | NASA 'EarthData' Login Utilities |
| earthtide | Parallel Implementation of 'ETERNA 3.40' for Prediction and Analysis of Earth Tides |
| earthtones | Derive a Color Palette from a Particular Location on Earth |
| Ease | Simulating Explicit Population Genetics Models |
| easy.glmnet | Functions to Simplify the Use of 'glmnet' for Machine Learning |
| easy.utils | Frequently Used Functions for Easy R Programming |
| EasyABC | Efficient Approximate Bayesian Computation Sampling Schemes |
| easyAHP | Analytic Hierarchy Process (AHP) |
| easyalluvial | Generate Alluvial Plots with a Single Line of Code |
| easyanova | Analysis of Variance and Other Important Complementary Analyses |
| easybgm | Extracting and Visualizing Bayesian Graphical Models |
| easybio | Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit |
| easycensus | Quickly Find, Extract, and Marginalize U.S. Census Tables |
| easyclimate | Easy Access to High-Resolution Daily Climate Data for Europe |
| easyCODA | Compositional Data Analysis in Practice |
| easycsv | Load Multiple 'csv' and 'txt' Tables |
| easydb | Easily Connect to Common Types of Databases |
| easyDes | An Easy Way to Descriptive Analysis |
| EasyDescribe | A Convenient Way of Descriptive Statistics |
| easyDifferentialGeneCoexpression | Easily Performs Differential Coexpression Analysis |
| easylabel | Interactive Scatter Plot and Volcano Plot Labels |
| EasyMx | Easy Model-Builder Functions for 'OpenMx' |
| easyNCDF | Tools to Easily Read/Write NetCDF Files into/from Multidimensional R Arrays |
| easynls | Easy Nonlinear Model |
| easyORtables | Easy Odds Ratio Tables |
| easypackages | Easy Loading and Installing of Packages |
| easypower | Sample Size Estimation for Experimental Designs |
| easyPSID | Reading, Formatting, and Organizing the Panel Study of Income Dynamics (PSID) |
| easyPubMed | Search and Retrieve Scientific Publication Records from PubMed |
| easyr | Helpful Functions from Oliver Wyman Actuarial Consulting |
| easyreg | Easy Regression |
| easySdcTable | Easy Interface to the Statistical Disclosure Control Package 'sdcTable' Extended with Own Implementation of 'GaussSuppression' |
| easystats | Framework for Easy Statistical Modeling, Visualization, and Reporting |
| easysurv | Simplify Survival Data Analysis and Model Fitting |
| easySVG | An Easy SVG Basic Elements Generator |
| easyVerification | Ensemble Forecast Verification for Large Data Sets |
| eat | Efficiency Analysis Trees |
| eatATA | Create Constraints for Small Test Assembly Problems |
| eatDB | Spreadsheet Interface for Relational Databases |
| eatGADS | Data Management of Large Hierarchical Data |
| EATME | Exponentially Weighted Moving Average with Adjustments to Measurement Error |
| eatRep | Educational Assessment Tools for Replication Methods |
| eatTools | Miscellaneous Functions for the Analysis of Educational Assessments |
| eba | Elimination-by-Aspects Models |
| ebal | Entropy Reweighting to Create Balanced Samples |
| EBASE | Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism |
| EbayesThresh | Empirical Bayes Thresholding and Related Methods |
| EBCHS | An Empirical Bayes Method for Chi-Squared Data |
| ebci | Robust Empirical Bayes Confidence Intervals |
| EBcoBART | Co-Data Learning for Bayesian Additive Regression Trees |
| ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |
| EBEN | Empirical Bayesian Elastic Net |
| ebGenotyping | Genotyping and SNP Detection using Next Generation Sequencing Data |
| EBglmnet | Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models |
| ebirdst | Access and Analyze eBird Status and Trends Data Products |
| EBMAforecast | Estimate Ensemble Bayesian Model Averaging Forecasts using Gibbs Sampling or EM-Algorithms |
| ebmc | Ensemble-Based Methods for Class Imbalance Problem |
| ebmstate | Empirical Bayes Multi-State Cox Model |
| ebnm | Solve the Empirical Bayes Normal Means Problem |
| EBPRS | Derive Polygenic Risk Score Based on Emprical Bayes Theory |
| EBrank | Empirical Bayes Ranking |
| ebreg | Implementation of the Empirical Bayes Method |
| eBsc | "Empirical Bayes Smoothing Splines with Correlated Errors" |
| ebTobit | Empirical Bayesian Tobit Matrix Estimation |
| ebvcube | Working with netCDF for Essential Biodiversity Variables |
| ec50estimator | An Automated Way to Estimate EC50 for Stratified Datasets |
| ecan | Ecological Analysis and Visualization |
| eCAR | Eigenvalue CAR Models |
| ecb | Programmatic Access to the European Central Bank's Statistical Data Warehouse |
| ecce | Translate English Sentence into Chinese, or Translate Chinese Sentence into English |
| Ecdat | Data Sets for Econometrics |
| ecdfHT | Empirical CDF for Heavy Tailed Data |
| eCerto | Statistical Tests for the Production of Reference Materials |
| ecespa | Functions for Spatial Point Pattern Analysis |
| Ecfun | Functions for 'Ecdat' |
| ECGofTestDx | A Goodness-of-Fit Test for Elliptical Distributions with Diagnostic Capabilities |
| ech | Downloading and Processing Microdata from ECH-INE (Uruguay) |
| ECharts2Shiny | Embedding Interactive Charts Generated with ECharts Library into Shiny Applications |
| echarts4r | Create Interactive Graphs with 'Echarts JavaScript' Version 5 |
| echarty | Minimal R/Shiny Interface to JavaScript Library 'ECharts' |
| echelon | The Echelon Analysis and the Detection of Spatial Clusters using Echelon Scan Method |
| eChem | Simulations for Electrochemistry Experiments |
| echo | Echo Code Evaluations |
| echo.find | Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO) |
| echogram | Echogram Visualisation and Analysis |
| echoice2 | Choice Models with Economic Foundation |
| echor | Access EPA 'ECHO' Data |
| ecic | Extended Changes-in-Changes |
| ecipex | Efficient Calculation of Fine Structure Isotope Patterns via Fourier Transforms of Simplex-Based Elemental Models |
| ECLRMC | Ensemble Correlation-Based Low-Rank Matrix Completion |
| eclust | Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data |
| ecm | Build Error Correction Models |
| ecmwfr | Interface to 'ECMWF' and 'CDS' Data Web Services |
| ecocbo | Calculating Optimum Sampling Effort in Community Ecology |
| ecochange | Integrating Ecosystem Remote Sensing Products to Derive EBV Indicators |
| ecocomDP | Tools to Create, Use, and Convert ecocomDP Data |
| ecoCopula | Graphical Modelling and Ordination using Copulas |
| ecode | Ordinary Differential Equation Systems in Ecology |
| EcoDiet | Estimating a Diet Matrix from Biotracer and Stomach Content Data |
| ecodist | Dissimilarity-Based Functions for Ecological Analysis |
| EcoEnsemble | A General Framework for Combining Ecosystem Models |
| Ecohydmod | Ecohydrological Modelling |
| EcoIndR | Ecological Indicators |
| ECoL | Complexity Measures for Supervised Problems |
| ecolMod | "A Practical Guide to Ecological Modelling - Using R as a Simulation Platform" |
| ecolottery | Coalescent-Based Simulation of Ecological Communities |
| ecolRxC | Ecological Inference of RxC Tables by Latent Structure Approaches |
| ecolTest | Community Ecology Tests |
| EconAndProdEfficiency | Economic and Production Efficiency |
| EconDemand | General Analysis of Various Economics Demand Systems |
| econet | Estimation of Parameter-Dependent Network Centrality Measures |
| EcoNetGen | Simulate and Sample from Ecological Interaction Networks |
| econetwork | Analyzing Ecological Networks |
| EconGeo | Computing Key Indicators of the Spatial Distribution of Economic Activities |
| economiccomplexity | Computational Methods for Economic Complexity |
| econullnetr | Null Model Analysis for Ecological Networks |
| ecopower | Power Estimates and Equivalence Testing for Multivariate Data |
| ecoreg | Ecological Regression using Aggregate and Individual Data |
| ecoregime | Analysis of Ecological Dynamic Regimes |
| ecorest | Conducts Analyses Informing Ecosystem Restoration Decisions |
| ecos | Economic Statistics System of the Bank of Korea |
| ecosim | Toolbox for Aquatic Ecosystem Modeling |
| ECOSolveR | Embedded Conic Solver in R |
| ecospace | Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks |
| ecospat | Spatial Ecology Miscellaneous Methods |
| ecostats | Code and Data Accompanying the Eco-Stats Text (Warton 2022) |
| ecostatscale | Statistical Scaling Functions for Ecological Systems |
| EcotoneFinder | Characterising and Locating Ecotones and Communities |
| ecotox | Analysis of Ecotoxicology |
| ecotoxicology | Methods for Ecotoxicology |
| ECOTOXr | Download and Extract Data from US EPA's ECOTOX Database |
| ecotraj | Ecological Trajectory Analysis |
| EcoTroph | An Implementation of the EcoTroph Ecosystem Modelling Approach |
| ecoval | Procedures for Ecological Assessment of Surface Waters |
| EcoVirtual | Simulation of Ecological Models |
| ecp | Non-Parametric Multiple Change-Point Analysis of Multivariate Data |
| ecpc | Flexible Co-Data Learning for High-Dimensional Prediction |
| ecpdist | Extended Chen-Poisson Lifetime Distribution |
| ecr | Evolutionary Computation in R |
| ectotemp | Quantitative Estimates of Small Ectotherm Temperature Regulation Effectiveness |
| ECTSVR | Cointegration Based Support Vector Regression Model |
| ECTTDNN | Cointegration Based Timedelay Neural Network Model |
| Ecume | Equality of 2 (or k) Continuous Univariate and Multivariate Distributions |
| eCV | Enhanced Coefficient of Variation and IDR Extensions for Reproducibility Assessment |
| ed50 | Estimate ED50 and Its Confidence Interval |
| ed50simulation | Estimate ED50 and Its Confidence Interval |
| eda4treeR | Experimental Design and Analysis for Tree Improvement |
| EDCimport | Import Data from EDC Software |
| edcpR | Ecological Data Collection and Processing Package |
| eddington | Compute a Cyclist's Eddington Number |
| edeaR | Exploratory and Descriptive Event-Based Data Analysis |
| edecob | Event Detection Using Confidence Bounds |
| edf | Read Data from European Data Format (EDF and EDF+) Files |
| edfReader | Reading EDF(+) and BDF(+) Files |
| EDFtest | Goodness of Fit Based on Empirical Distribution Function |
| edfun | Creating Empirical Distribution Functions |
| edgar | Tool for the U.S. SEC EDGAR Retrieval and Parsing of Corporate Filings |
| edgarWebR | SEC Filings Access |
| edgebundle | Algorithms for Bundling Edges in Networks and Visualizing Flow and Metro Maps |
| edgebundleR | Circle Plot with Bundled Edges |
| edgeCorr | Spatial Edge Correction |
| edgedata | Datasets that Support the EDGE Server DIY Logic |
| edibble | Encapsulating Elements of Experimental Design |
| ediblecity | Modeling Urban Agriculture at City Scale |
| edina | Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate Model |
| EDISON | Network Reconstruction and Changepoint Detection |
| editbl | 'DT' Extension for CRUD (Create, Read, Update, Delete) Applications in 'shiny' |
| editData | 'RStudio' Addin for Editing a 'data.frame' |
| eDITH | Model Transport of Environmental DNA in River Networks |
| editrules | Parsing, Applying, and Manipulating Data Cleaning Rules |
| EDIutils | An API Client for the Environmental Data Initiative Repository |
| edl | Toolbox for Error-Driven Learning Simulations with Two-Layer Networks |
| edlibR | R Integration for Edlib, the C/C++ Library for Exact Pairwise Sequence Alignment using Edit (Levenshtein) Distance |
| eDMA | Dynamic Model Averaging with Grid Search |
| edmcr | Euclidean Distance Matrix Completion Tools |
| edmdata | Data Sets for Psychometric Modeling |
| EDMeasure | Energy-Based Dependence Measures |
| eDNAjoint | Joint Modeling of Traditional and Environmental DNA Survey Data in a Bayesian Framework |
| EDNE.EQ | Implements the EDNE-Test for Equivalence |
| EDOIF | Empirical Distribution Ordering Inference Framework (EDOIF) |
| EDOtrans | Euclidean Distance-Optimized Data Transformation |
| edstan | Stan Models for Item Response Theory |
| EdSurvey | Analysis of NCES Education Survey and Assessment Data |
| educationdata | Retrieve Records from the Urban Institute's Education Data Portal API |
| educineq | Compute and Decompose Inequality in Education |
| edwards97 | Langmuir Semi-Empirical Coagulation Model |
| eefAnalytics | Robust Analytical Methods for Evaluating Educational Interventions using Randomised Controlled Trials Designs |
| eegkit | Toolkit for Electroencephalography Data |
| eegkitdata | Electroencephalography Toolkit Datasets |
| EEM | Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data |
| eemdARIMA | EEMD Based Auto Regressive Integrated Moving Average Model |
| EEMDelm | Ensemble Empirical Mode Decomposition and Its Variant Based ELM Model |
| EEMDlstm | EEMD Based LSTM Model for Time Series Forecasting |
| EEMDSVR | Ensemble Empirical Mode Decomposition and Its Variant Based Support Vector Regression Model |
| eemdTDNN | EEMD and Its Variant Based Time Delay Neural Network Model |
| EEML | Ensemble Explainable Machine Learning Models |
| eemR | Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data |
| eeptools | Convenience Functions for Education Data |
| eesim | Simulate and Evaluate Time Series for Environmental Epidemiology |
| EESPCA | Eigenvectors from Eigenvalues Sparse Principal Component Analysis (EESPCA) |
| ef | Modelling Framework for the Estimation of Salmonid Abundance |
| EFA.dimensions | Exploratory Factor Analysis Functions for Assessing Dimensionality |
| EFA.MRFA | Dimensionality Assessment Using Minimum Rank Factor Analysis |
| EFAfactors | Determining the Number of Factors in Exploratory Factor Analysis |
| EFAtools | Fast and Flexible Implementations of Exploratory Factor Analysis Tools |
| EFAutilities | Utility Functions for Exploratory Factor Analysis |
| efdm | Simulate Forest Resources with the European Forestry Dynamics Model |
| EFDR | Wavelet-Based Enhanced FDR for Detecting Signals from Complete or Incomplete Spatially Aggregated Data |
| eff2 | Efficient Least Squares for Total Causal Effects |
| effClust | Calculate Effective Number of Clusters for a Linear Model |
| EffectLiteR | Average and Conditional Effects |
| effectR | Predicts Oomycete Effectors |
| effects | Effect Displays for Linear, Generalized Linear, and Other Models |
| effectsize | Indices of Effect Size |
| effectsizescr | Indices for Single-Case Research |
| EffectStars | Visualization of Categorical Response Models |
| EffectStars2 | Effect Stars |
| EffectTreat | Prediction of Therapeutic Success |
| EfficientMaxEigenpair | Efficient Initials for Computing the Maximal Eigenpair |
| efflog | The Causal Effects for a Causal Loglinear Model |
| effsize | Efficient Effect Size Computation |
| eFRED | Fetch Data from the Federal Reserve Economic Database |
| EFS | Tool for Ensemble Feature Selection |
| ega | Error Grid Analysis |
| EGAnet | Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics |
| egcm | Engle-Granger Cointegration Models |
| egg | Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel Size |
| eggCounts | Hierarchical Modelling of Faecal Egg Counts |
| eglhmm | Extended Generalised Linear Hidden Markov Models |
| EGM | Evaluating Cardiac Electrophysiology Signals |
| EgoCor | Simple Presentation of Estimated Exponential Semi-Variograms |
| egor | Import and Analyse Ego-Centered Network Data |
| EGRET | Exploration and Graphics for RivEr Trends |
| EGRETci | Exploration and Graphics for RivEr Trends Confidence Intervals |
| EGRNi | Ensemble Gene Regulatory Network Inference |
| eGST | Leveraging eQTLs to Identify Individual-Level Tissue of Interest for a Complex Trait |
| eha | Event History Analysis |
| ehaGoF | Calculates Goodness of Fit Statistics |
| eHDPrep | Quality Control and Semantic Enrichment of Datasets |
| ehelp | Enhanced Help to Enable "Docstring"-Comments in Users Functions |
| eHOF | Extended HOF (Huisman-Olff-Fresco) Models |
| EHR | Electronic Health Record (EHR) Data Processing and Analysis Tool |
| EHRtemporalVariability | Delineating Temporal Dataset Shifts in Electronic Health Records |
| ehymet | Methodologies for Functional Data Based on the Epigraph and Hypograph Indices |
| ei | Ecological Inference |
| ei.Datasets | Real Datasets for Assessing Ecological Inference Algorithms |
| eia | API Wrapper for U.S. Energy Information Administration ('EIA') Open Data |
| EIAapi | Query Data from the 'EIA' API |
| eiCircles | Ecological Inference of RxC Tables by Overdispersed-Multinomial Models |
| eicm | Explicit Interaction Community Models |
| eider | Declarative Feature Extraction from Tabular Data Records |
| EIEntropy | Ecological Inference Applying Entropy |
| eiExpand | Utilities for Expanding Functionality of 'eiCompare' |
| eigenmodel | Semiparametric Factor and Regression Models for Symmetric Relational Data |
| EigenR | Complex Matrix Algebra with 'Eigen' |
| eikosograms | The Picture of Probability |
| eimpute | Efficiently Impute Large Scale Incomplete Matrix |
| einet | Effective Information and Causal Emergence |
| einsum | Einstein Summation |
| eiopaR | Access to RFR (Risk-Free Rate) Curves Produced by the EIOPA |
| eiPack | Ecological Inference and Higher-Dimension Data Management |
| eirm | Explanatory Item Response Modeling for Dichotomous and Polytomous Items |
| eive | An Algorithm for Reducing Errors-in-Variable Bias in Simple and Multiple Linear Regressions |
| eivtools | Measurement Error Modeling Tools |
| EIX | Explain Interactions in 'XGBoost' |
| eixport | Export Emissions to Atmospheric Models |
| EKMCMC | MCMC Procedures for Estimating Enzyme Kinetics Constants |
| eks | Tidy and Geospatial Kernel Smoothing |
| EL | Two-Sample Empirical Likelihood |
| EL2Surv | Empirical Likelihood (EL) for Comparing Two Survival Functions |
| elaborator | A 'shiny' Application for Exploring Laboratory Data |
| elasdics | Elastic Analysis of Sparse, Dense and Irregular Curves |
| elasso | Enhanced Least Absolute Shrinkage and Selection Operator Regression Model |
| elastes | Elastic Full Procrustes Means for Sparse and Irregular Planar Curves |
| elastic | General Purpose Interface to 'Elasticsearch' |
| elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |
| elec | Collection of Functions for Statistical Election Audits |
| EleChemr | Electrochemical Reactions Simulation |
| elect | Estimation of Life Expectancies Using Multi-State Models |
| ElectDecomp | Decomposition of Seats-to-Votes Distortion in Multimember Elections |
| elections | USA Presidential Elections Data |
| elections.dtree | Ranked Voting Election Audits with Dirichlet-Trees |
| electionsBR | R Functions to Download and Clean Brazilian Electoral Data |
| electivity | Algorithms for Electivity Indices |
| electoral | Allocating Seats Methods and Party System Scores |
| elevatr | Access Elevation Data from Various APIs |
| ElevDistr | Calculate the Distance to the Nearest Local Treeline |
| elexr | Load Associated Press Election Results with Elex |
| elfDistr | Kumaraswamy Complementary Weibull Geometric (Kw-CWG) Probability Distribution |
| elgbd | Empirical Likelihood for General Block Designs |
| elhmc | Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo |
| ELISAtools | ELISA Data Analysis with Batch Correction |
| elisr | Exploratory Likert Scaling |
| eList | List Comprehension and Tools |
| elitism | Equipment for Logarithmic and Linear Time Stepwise Multiple Hypothesis Testing |
| Elja | Linear, Logistic and Generalized Linear Models Regressions for the EnvWAS/EWAS Approach |
| elliplot | Ellipse Summary Plot of Quantiles |
| ellipse | Functions for Drawing Ellipses and Ellipse-Like Confidence Regions |
| ellipsis | Tools for Working with ... |
| ElliptCopulas | Inference of Elliptical Distributions and Copulas |
| elliptic | Weierstrass and Jacobi Elliptic Functions |
| ellipticalsymmetry | Elliptical Symmetry Tests |
| elmNNRcpp | The Extreme Learning Machine Algorithm |
| ELMR | Extreme Machine Learning (ELM) |
| ELMSO | Implementation of the Efficient Large-Scale Online Display Advertising Algorithm |
| eLNNpairedCov | Model-Based Gene Selection for Paired Data |
| elo | Ranking Teams by Elo Rating and Comparable Methods |
| EloChoice | Preference Rating for Visual Stimuli Based on Elo Ratings |
| EloOptimized | Optimized Elo Rating Method for Obtaining Dominance Ranks |
| EloRating | Animal Dominance Hierarchies by Elo Rating |
| EloSteepness | Bayesian Dominance Hierarchy Steepness via Elo Rating and David's Scores |
| elrm | Exact Logistic Regression via MCMC |
| elsa | Entropy-Based Local Indicator of Spatial Association |
| ELT | Experience Life Tables |
| eltr | Utilise Catastrophe Model Event Loss Table Outputs |
| ELYP | Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model |
| em | Generic EM Algorithm |
| EM.Fuzzy | EM Algorithm for Maximum Likelihood Estimation by Non-Precise Information |
| emailjsr | 'emailjs' Support |
| emailvalidation | Client for the 'emailalvalidation.io' E-Mail Validation API |
| EMAR | Empirical Model Assessment |
| EMAS | Epigenome-Wide Mediation Analysis Study |
| emayili | Send Email Messages |
| emBayes | Robust Bayesian Variable Selection via Expectation-Maximization |
| EMbC | Expectation-Maximization Binary Clustering |
| embed | Extra Recipes for Encoding Predictors |
| EmbedSOM | Fast Embedding Guided by Self-Organizing Map |
| embryogrowth | Tools to Analyze the Thermal Reaction Norm of Embryo Growth |
| EMC2 | Bayesian Hierarchical Analysis of Cognitive Models of Choice |
| EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |
| EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |
| EMDANNhybrid | Empirical Mode Decomposition Based Artificial Neural Network Model |
| emdbook | Support Functions and Data for "Ecological Models and Data" |
| emdi | Estimating and Mapping Disaggregated Indicators |
| emdist | Earth Mover's Distance |
| EMDSVRhybrid | Empirical Mode Decomposition Based Support Vector Regression Model |
| emery | Accuracy Statistic Estimation for Imperfect Gold Standards |
| emg | Exponentially Modified Gaussian (EMG) Distribution |
| EMgaussian | Expectation-Maximization Algorithm for Multivariate Normal (Gaussian) with Missing Data |
| emhawkes | Exponential Multivariate Hawkes Model |
| EmiR | Evolutionary Minimizer for R |
| emIRT | EM Algorithms for Estimating Item Response Theory Models |
| EmissV | Tools for Create Emissions for Air Quality Models |
| EmiStatR | Emissions and Statistics in R for Wastewater and Pollutants in Combined Sewer Systems |
| EMJMCMC | Evolutionary Mode Jumping Markov Chain Monte Carlo Expert Toolbox |
| EML | Read and Write Ecological Metadata Language Files |
| emld | Ecological Metadata as Linked Data |
| EMLI | Computationally Efficient Maximum Likelihood Identification of Linear Dynamical Systems |
| EMMAgeo | End-Member Modelling of Grain-Size Data |
| emmeans | Estimated Marginal Means, aka Least-Squares Means |
| EMMIXgene | A Mixture Model-Based Approach to the Clustering of Microarray Expression Data |
| EMMIXmfa | Mixture Models with Component-Wise Factor Analyzers |
| EMMIXSSL | Semi-Supervised Gaussian Mixture Model with a Missing-Data Mechanism |
| EMMLi | A Maximum Likelihood Approach to the Analysis of Modularity |
| EMMREML | Fitting Mixed Models with Known Covariance Structures |
| emoa | Evolutionary Multiobjective Optimization Algorithms |
| emoji | Data and Function to Work with Emojis |
| emojifont | Emoji and Font Awesome in Graphics |
| emon | Tools for Environmental and Ecological Survey Design |
| emov | Eye Movement Analysis Package for Fixation and Saccade Detection |
| EMP | Expected Maximum Profit Classification Performance Measure |
| EMpeaksR | Conducting the Peak Fitting Based on the EM Algorithm |
| emphatic | Exploratory Analysis of Tabular Data using Colour Highlighting |
| empichar | Evaluates the Empirical Characteristic Function for Multivariate Samples |
| EmpiricalCalibration | Routines for Performing Empirical Calibration of Observational Study Estimates |
| emplik | Empirical Likelihood Ratio for Censored/Truncated Data |
| emplik2 | Empirical Likelihood Ratio Test for Two-Sample U-Statistics with Censored Data |
| emplikAUC | Empirical Likelihood Ratio Test/Confidence Interval for AUC or pAUC |
| ems | Epimed Solutions Collection for Data Editing, Analysis, and Benchmark of Health Units |
| EMSaov | The Analysis of Variance with EMS |
| EMSC | Extended Multiplicative Signal Correction |
| EMSNM | EM Algorithm for Sigmoid Normal Model |
| EMSS | Some EM-Type Estimation Methods for the Heckman Selection Model |
| emstreeR | Tools for Fast Computing and Visualizing Euclidean Minimum Spanning Trees |
| EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate Data |
| emulator | Bayesian Emulation of Computer Programs |
| emuR | Main Package of the EMU Speech Database Management System |
| EncDNA | Encoding of Nucleotide Sequences into Numeric Feature Vectors |
| eNchange | Ensemble Methods for Multiple Change-Point Detection |
| encode | Represent Ordered Lists and Pairs as Strings |
| EncompassTest | Direct Multi-Step Forecast Based Comparison of Nested Models via an Encompassing Test |
| encryptedRmd | Encrypt Html Reports Using 'Libsodium' |
| encryptr | Easily Encrypt and Decrypt Data Frame/Tibble Columns or Files using RSA Public/Private Keys |
| endogeneity | Recursive Two-Stage Models to Address Endogeneity |
| endogenous | Classical Simultaneous Equation Models |
| endorse | Bayesian Measurement Models for Analyzing Endorsement Experiments |
| endoSwitch | Endogenous Switching Regression Models |
| endtoend | Transmissions and Receptions in an End to End Network |
| energy | E-Statistics: Multivariate Inference via the Energy of Data |
| EnergyOnlineCPM | Distribution Free Multivariate Control Chart Based on Energy Test |
| energyr | Data Published by the United States Federal Energy Regulatory Commission |
| enerscape | Compute Energy Landscapes |
| enetLTS | Robust and Sparse Methods for High Dimensional Linear and Binary and Multinomial Regression |
| english | Translate Integers into English |
| EngrEcon | Engineering Economics Analysis for Engineering Projects Cost Analysis |
| engression | Engression Modelling |
| EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |
| ENMeval | Automated Tuning and Evaluations of Ecological Niche Models |
| enmpa | Ecological Niche Modeling using Presence-Absence Data |
| enmSdmX | Species Distribution Modeling and Ecological Niche Modeling |
| ENMTools | Analysis of Niche Evolution using Niche and Distribution Models |
| enpls | Ensemble Partial Least Squares Regression |
| EnrichIntersect | Enrichment Analysis and Intersecting Sankey Diagram |
| enrichR | Provides an R Interface to 'Enrichr' |
| enrichwith | Methods to Enrich R Objects with Extra Components |
| EnsCat | Clustering of Categorical Data |
| EnsembleBase | Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling |
| ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |
| EnsembleCV | Extensible Package for Cross-Validation-Based Integration of Base Learners |
| ensembleMOS | Ensemble Model Output Statistics |
| EnsemblePCReg | Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning |
| EnsemblePenReg | Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners |
| ensemblepp | Ensemble Postprocessing Data Sets |
| ensembleTax | Ensemble Taxonomic Assignments of Amplicon Sequencing Data |
| enshuman | Human Gene Annotation Data from 'Ensembl' |
| ensr | Elastic Net SearcheR |
| entropart | Entropy Partitioning to Measure Diversity |
| EntropicStatistics | Functions Based on Entropic Statistics |
| entropy | Estimation of Entropy, Mutual Information and Related Quantities |
| EntropyEstimation | Estimation of Entropy and Related Quantities |
| EntropyMCMC | MCMC Simulation and Convergence Evaluation using Entropy and Kullback-Leibler Divergence Estimation |
| entrymodels | Estimate Entry Models |
| envalysis | Miscellaneous Functions for Environmental Analyses |
| EnvCpt | Detection of Structural Changes in Climate and Environment Time Series |
| envDocument | Document the R Working Environment |
| enveomics.R | Various Utilities for Microbial Genomics and Metagenomics |
| envi | Environmental Interpolation using Spatial Kernel Density Estimation |
| enviGCMS | GC/LC-MS Data Analysis for Environmental Science |
| enviPat | Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry |
| envir | Manage R Environments Better |
| envirem | Generation of ENVIREM Variables |
| EnviroPRA2 | Environmental Probabilistic Risk Assessment Tools |
| envnames | Keep Track of User-Defined Environment Names |
| EnvNicheR | Niche Estimation |
| EnvNJ | Whole Genome Phylogenies Using Sequence Environments |
| envoutliers | Methods for Identification of Outliers in Environmental Data |
| envstat | Configurable Reporting on your External Compute Environment |
| EnvStats | Package for Environmental Statistics, Including US EPA Guidance |
| envvar | Make Working with Environment Variables Easier and More Consistent |
| eoa3 | Wildlife Mortality Estimator for Low Fatality Rates and Imperfect Detection |
| eodhdR2 | Official R API for Fetching Data from 'EODHD' |
| eoffice | Export or Graph and Tables to 'Microsoft' Office and Import Figures and Tables |
| eoR | Data Management Package (Exposure and Occurrence Data in R) |
| epade | Easy Plots |
| epandist | Statistical Functions for the Censored and Uncensored Epanechnikov Distribution |
| epanet2toolkit | Call 'EPANET' Functions to Simulate Pipe Networks |
| epanetReader | Read Epanet Files into R |
| epca | Exploratory Principal Component Analysis |
| ePCR | Ensemble Penalized Cox Regression for Survival Prediction |
| epe4md | EPE's 4MD Model to Forecast the Adoption of Distributed Generation |
| eph | Argentina's Permanent Household Survey Data and Manipulation Utilities |
| Epi | Statistical Analysis in Epidemiology |
| epibasix | Elementary Epidemiological Functions for Epidemiology and Biostatistics |
| epicasting | Ewnet: An Ensemble Wavelet Neural Network for Forecasting and Epicasting |
| epiCleanr | A Tidy Solution for Epidemiological Data |
| epiCo | Statistical and Viz Tools for Vector-Borne Diseases in Colombia |
| epicontacts | Handling, Visualisation and Analysis of Epidemiological Contacts |
| EpiContactTrace | Epidemiological Tool for Contact Tracing |
| EpiCurve | Plot an Epidemic Curve |
| epidata | Tools to Retrieve Economic Policy Institute Data Library Extracts |
| epidatr | Client for Delphi's 'Epidata' API |
| epiDisplay | Epidemiological Data Display Package |
| epidm | UK Epidemiological Data Management |
| EpiDynamics | Dynamic Models in Epidemiology |
| EpiEstim | Estimate Time Varying Reproduction Numbers from Epidemic Curves |
| epifitter | Analysis and Simulation of Plant Disease Progress Curves |
| epiflows | Predicting Disease Spread from Flow Data |
| EpiForsk | Code Sharing at the Department of Epidemiological Research at Statens Serum Institut |
| epigraphdb | Interface Package for the 'EpiGraphDB' Platform |
| epigrowthfit | Nonlinear Mixed Effects Models of Epidemic Growth |
| EpiILM | Spatial and Network Based Individual Level Models for Epidemics |
| EpiILMCT | Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics |
| EpiInvert | Variational Techniques in Epidemiology |
| epikit | Miscellaneous Helper Tools for Epidemiologists |
| epilogi | The 'epilogi' Variable Selection Algorithm for Continuous Data |
| EpiLPS | A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters |
| epimdr | Functions and Data for "Epidemics: Models and Data in R" |
| epimdr2 | Functions and Data for "Epidemics: Models and Data in R (2nd Edition)" |
| EpiModel | Mathematical Modeling of Infectious Disease Dynamics |
| epinet | Epidemic/Network-Related Tools |
| epinetr | Epistatic Network Modelling with Forward-Time Simulation |
| EpiNow2 | Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters |
| epiomics | Analysis of Omics Data in Observational Studies |
| epiphy | Analysis of Plant Disease Epidemics |
| epiR | Tools for the Analysis of Epidemiological Data |
| EpiReport | Epidemiological Report |
| episcan | Scan Pairwise Epistasis |
| EpiSemble | Ensemble Based Machine Learning Approach for Predicting Methylation States |
| episensr | Basic Sensitivity Analysis of Epidemiological Results |
| EpiSignalDetection | Signal Detection Analysis |
| EpiStats | Tools for Epidemiologists |
| EpistemicGameTheory | Constructing an Epistemic Model for the Games with Two Players |
| epitab | Flexible Contingency Tables for Epidemiology |
| EpiTest | Test for Gene x Gene Interactions in Bi-Parental Populations |
| epitools | Epidemiology Tools |
| epitrix | Small Helpers and Tricks for Epidemics Analysis |
| epitweetr | Early Detection of Public Health Threats from 'Twitter' Data |
| epiworldR | Fast Agent-Based Epi Models |
| epiworldRShiny | A 'shiny' Wrapper of the R Package 'epiworldR' |
| epizootic | Spatially Explicit Population Models of Disease Transmission in Wildlife |
| EPLSIM | Partial Linear Single Index Models for Environmental Mixture Analysis |
| eplusr | A Toolkit for Using Whole Building Simulation Program 'EnergyPlus' |
| eply | Apply a Function Over Expressions |
| epm | EcoPhyloMapper |
| epmrob | Robust Estimation of Probit Models with Endogeneity |
| epo | Enhanced Portfolio Optimization (EPO) |
| epoc | Endogenous Perturbation Analysis of Cancer |
| epocakir | Clinical Coding of Patients with Kidney Disease |
| eponge | Keep Your Environment Clean |
| epos | Epilepsy Ontologies' Similarities |
| epoxy | String Interpolation for Documents, Reports and Apps |
| epr | Easy Polynomial Regression |
| epsiwal | Exact Post Selection Inference with Applications to the Lasso |
| EPT | Ensemble Patch Transform, Visualization and Decomposition |
| epubr | Read EPUB File Metadata and Text |
| epwshiftr | Create Future 'EnergyPlus' Weather Files using 'CMIP6' Data |
| EPX | Ensemble of Phalanxes |
| epxToR | Import 'Epidata' XML Files '.epx' |
| eq5d | Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index Scores |
| eq5dsuite | Manipulating and Analysing EQ-5d Data |
| EQL | Extended-Quasi-Likelihood-Function (EQL) |
| equalCovs | Testing the Equality of Two Covariance Matrices |
| Equalden.HD | Testing the Equality of a High Dimensional Set of Densities |
| EQUALrepeat | Algorithm Driven Time Series Analysis for Researchers without Coding Skills |
| EQUALSTATS | Algorithm Driven Statistical Analysis for Researchers without Coding Skills |
| equaltestMI | Examine Measurement Invariance via Equivalence Testing and Projection Method |
| equatags | Equations to 'XML' |
| equate | Observed-Score Linking and Equating |
| equateIRT | IRT Equating Methods |
| equateMultiple | Equating of Multiple Forms |
| equatiomatic | Transform Models into 'LaTeX' Equations |
| equiBSPD | Equivalent Estimation Balanced Split Plot Designs |
| equil2 | Calculate Urinary Saturation with the EQUIL2 Algorithm |
| EquiSurv | Modeling, Confidence Intervals and Equivalence of Survival Curves |
| EquiTrends | Equivalence Testing for Pre-Trends in Difference-in-Differences Designs |
| equivalence | Provides Tests and Graphics for Assessing Tests of Equivalence |
| equivalenceTest | Equivalence Test for the Means of Two Normal Distributions |
| EQUIVNONINF | Testing for Equivalence and Noninferiority |
| equivUMP | Uniformly Most Powerful Invariant Tests of Equivalence |
| ER | Effect + Residual Modelling |
| era | Year-Based Time Scales |
| erah | Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics |
| eratosthenes | Archaeological Synchronism |
| erboost | Nonparametric Multiple Expectile Regression via ER-Boost |
| ercv | Fitting Tails by the Empirical Residual Coefficient of Variation |
| ERDbuilder | Entity Relationship Diagrams Builder |
| erer | Empirical Research in Economics with R |
| erfe | Fits Expectile Regression for Panel Fixed Effect Model |
| ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |
| ergm.count | Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges |
| ergm.ego | Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data |
| ergm.multi | Fit, Simulate and Diagnose Exponential-Family Models for Multiple or Multilayer Networks |
| ergm.rank | Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data |
| ergMargins | Process Analysis for Exponential Random Graph Models |
| ergmgp | Tools for Modeling ERGM Generating Processes |
| ergmharris | Local Health Department network data set |
| ergmito | Exponential Random Graph Models for Small Networks |
| erify | Check Arguments and Generate Readable Error Messages |
| eRm | Extended Rasch Modeling |
| ern | Effective Reproduction Number Estimation |
| ERP | Significance Analysis of Event-Related Potentials Data |
| erp.easy | Event-Related Potential (ERP) Data Exploration Made Easy |
| ERPeq | Probabilistic Hazard Assessment |
| ERPM | Exponential Random Partition Models |
| errorist | Automatically Search Errors or Warnings |
| errorlocate | Locate Errors with Validation Rules |
| errors | Uncertainty Propagation for R Vectors |
| errum | Exploratory Reduced Reparameterized Unified Model Estimation |
| ERSA | Exploratory Regression 'Shiny' App |
| eRTG3D | Empirically Informed Random Trajectory Generation in 3-D |
| es.dif | Compute Effect Sizes of the Difference |
| esaddle | Extended Empirical Saddlepoint Density Approximations |
| esaps | Indicators of Electoral Systems and Party Systems |
| esback | Expected Shortfall Backtesting |
| esc | Effect Size Computation for Meta Analysis |
| escalation | A Modular Approach to Dose-Finding Clinical Trials |
| esci | Estimation Statistics with Confidence Intervals |
| EScvtmle | Experiment-Selector CV-TMLE for Integration of Observational and RCT Data |
| esDesign | Adaptive Enrichment Designs with Sample Size Re-Estimation |
| eSDM | Ensemble Tool for Predictions from Species Distribution Models |
| eseis | Environmental Seismology Toolbox |
| eselect | Adaptive Clinical Trial Designs with Endpoint Selection and Sample Size Reassessment |
| esem | Exploratory Structural Equation Modeling ESEM |
| esemifar | Smoothing Long-Memory Time Series |
| ESG | A Package for Asset Projection |
| eshrink | Shrinkage for Effect Estimation |
| eSIR | Extended State-Space SIR Models |
| esmisc | Misc Functions of Eduard Szöcs |
| esmprep | Data Preparation During and After the Use of the Experience Sampling Methodology (ESM) |
| esmtools | Preprocessing Experience Sampling Method (ESM) Data |
| espadon | Easy Study of Patient DICOM Data in Oncology |
| esquisse | Explore and Visualize Your Data Interactively |
| esreg | Joint Quantile and Expected Shortfall Regression |
| ess | Efficient Stepwise Selection in Decomposable Models |
| essentials | Essential Functions not Included in Base R |
| essHist | The Essential Histogram |
| essurvey | Download Data from the European Social Survey on the Fly |
| estadistica | Fundamentos De Estadistica Descriptiva e Inferencial |
| estatapi | R Interface to e-Stat API |
| EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |
| ESTER | Efficient Sequential Testing with Evidence Ratios |
| estimability | Tools for Assessing Estimability of Linear Predictions |
| EstimateGroupNetwork | Perform the Joint Graphical Lasso and Selects Tuning Parameters |
| estimateW | Estimation of Spatial Weight Matrices |
| EstimationTools | Maximum Likelihood Estimation for Probability Functions from Data Sets |
| estimators | Parameter Estimation |
| estimatr | Fast Estimators for Design-Based Inference |
| EstimDiagnostics | Diagnostic Tools and Unit Tests for Statistical Estimators |
| estimraw | Estimation of Four-Fold Table Cell Frequencies (Raw Data) from Effect Size Measures |
| estmeansd | Estimating the Sample Mean and Standard Deviation from Commonly Reported Quantiles in Meta-Analysis |
| EstMix | Tumor Clones Percentage Estimations |
| estprod | Estimation of Production Functions |
| esvis | Visualization and Estimation of Effect Sizes |
| et.nwfva | Forest Yield Tables for Northwest Germany and their Application |
| etable | Easy Table |
| ETAS | Modeling Earthquake Data Using 'ETAS' Model |
| ETASbootstrap | Bootstrap Confidence Interval Estimation for 'ETAS' Model Parameters |
| etasFLP | Mixed FLP and ML Estimation of ETAS Space-Time Point Processes for Earthquake Description |
| ETC | Equivalence to Control |
| ethnobotanyR | Calculate Quantitative Ethnobotany Indices |
| EthSEQ | Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data |
| etl | Extract-Transform-Load Framework for Medium Data |
| ETLUtils | Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data |
| etm | Empirical Transition Matrix |
| etrader | 'ETRADE' API Interface for R |
| etree | Classification and Regression with Structured and Mixed-Type Data |
| etrm | Energy Trading and Risk Management |
| etrunct | Computes Moments of Univariate Truncated t Distribution |
| etwfe | Extended Two-Way Fixed Effects |
| EuclideanSD | An Euclidean View of Center and Spread |
| Euclimatch | Euclidean Climatch Algorithm |
| eudract | Creates Safety Results Summary in XML to Upload to EudraCT, or ClinicalTrials.gov |
| eufmdis.adapt | Analyse 'EuFMDiS' Output Files via a Shiny App |
| EUfootball | Football Match Data of European Leagues |
| eulerian | eulerian: A package to find eulerian paths from graphs |
| eulerr | Area-Proportional Euler and Venn Diagrams with Ellipses |
| eummd | Efficient Univariate Maximum Mean Discrepancy |
| eunis.habitats | EUNIS Habitat Classification |
| Eunomia | Standard Dataset Manager for Observational Medical Outcomes Partnership Common Data Model Sample Datasets |
| eurlex | Retrieve Data on European Union Law |
| eurocordexr | Makes it Easier to Work with Daily 'netCDF' from EURO-CORDEX RCMs |
| eurodata | Fast and Easy Eurostat Data Import and Search |
| euroleaguer | 'Euroleague basketball API' |
| europeanaR | Interact with Metadata Records and Media on the Europeana Repository |
| europepmc | R Interface to the Europe PubMed Central RESTful Web Service |
| europop | Historical Populations of European Cities, 1500-1800 |
| EurosarcBayes | Bayesian Single Arm Sample Size Calculation Software |
| eurostat | Tools for Eurostat Open Data |
| eva | Extreme Value Analysis with Goodness-of-Fit Testing |
| evabic | Evaluation of Binary Classifiers |
| Evacluster | Evaluation Clustering Methods for Disease Subtypes Diagnosis |
| evalITR | Evaluating Individualized Treatment Rules |
| evalR | Evaluation of Unverified Code |
| evaluate | Parsing and Evaluation Tools that Provide More Details than the Default |
| EvaluateCore | Quality Evaluation of Core Collections |
| EvaluationMeasures | Collection of Model Evaluation Measure Functions |
| EValue | Sensitivity Analyses for Unmeasured Confounding and Other Biases in Observational Studies and Meta-Analyses |
| evapoRe | Evapotranspiration R Recipes |
| Evapotranspiration | Modelling Actual, Potential and Reference Crop Evapotranspiration |
| EVchargcost | Computes and Plot the Optimal Charging Strategy for Electric Vehicles |
| evclass | Evidential Distance-Based Classification |
| evclust | Evidential Clustering |
| EvCombR | Evidence Combination in R |
| evd | Functions for Extreme Value Distributions |
| evdbayes | Bayesian Analysis in Extreme Value Theory |
| event | Event History Procedures and Models |
| eventdataR | Event Data Repository |
| EventDetectGUI | Graphical User Interface for the 'EventDetectR' Package |
| EventDetectR | Event Detection Framework |
| eventglm | Regression Models for Event History Outcomes |
| eventInterval | Sequential Event Interval Analysis |
| eventPred | Event Prediction |
| EventPredInCure | Event Prediction Including Cured Population |
| eventstream | Streaming Events and their Early Classification |
| eventstudyr | Estimation and Visualization of Linear Panel Event Studies |
| eventTrack | Event Prediction for Time-to-Event Endpoints |
| EventWinRatios | Event-Specific Win Ratios for Terminal and Non-Terminal Events |
| evgam | Generalised Additive Extreme Value Models |
| EVI | Epidemic Volatility Index as an Early-Warning Tool |
| evian | Evidential Analysis of Genetic Association Data |
| evidence | Analysis of Scientific Evidence Using Bayesian and Likelihood Methods |
| evidenceFactors | Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies |
| EvidenceSynthesis | Synthesizing Causal Evidence in a Distributed Research Network |
| evident | Evidence Factors in Observational Studies |
| EviewsR | A Seamless Integration of 'EViews' and R |
| evilDice | Test Dice Sets for Intransitive Properties |
| evinf | Inference with Extreme Value Inflated Count Data |
| evir | Extreme Values in R |
| evitaicossa | Antiassociative Algebra |
| evmix | Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation |
| evobiR | Comparative and Population Genetic Analyses |
| evola | Evolutionary Algorithm |
| evolMap | Dynamic and Interactive Maps |
| evolqg | Evolutionary Quantitative Genetics |
| EvolutionaryGames | Important Concepts of Evolutionary Game Theory |
| evolvability | Calculation of Evolvability Parameters |
| Evomorph | Evolutionary Morphometric Simulation |
| evoper | Evolutionary Parameter Estimation for 'Repast Simphony' Models |
| EvoPhylo | Pre- And Postprocessing of Morphological Data from Relaxed Clock Bayesian Phylogenetics |
| evoTS | Analyses of Evolutionary Time-Series |
| evprof | Electric Vehicle Charging Sessions Profiling and Modelling |
| evreg | Evidential Regression |
| evsim | Electric Vehicle Charging Sessions Simulation |
| evt0 | Mean of Order P, Peaks over Random Threshold Hill and High Quantile Estimates |
| evtclass | Extreme Value Theory for Open Set Classification - GPD and GEV Classifiers |
| evtree | Evolutionary Learning of Globally Optimal Trees |
| EWGoF | Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions |
| ewoc | Escalation with Overdose Control |
| EWOC.Comb | Escalation with Overdose Control using 2 Drug Combinations |
| ewp | An Empirical Model for Underdispersed Count Data |
| EwR | Econometrics with R |
| EWS | Early Warning System |
| EWSmethods | Forecasting Tipping Points at the Community Level |
| Exact | Unconditional Exact Test |
| exact.n | Exact Samples Sizes and Inference for Clinical Trials with Binary Endpoint |
| exact2x2 | Exact Tests and Confidence Intervals for 2x2 Tables |
| exactamente | Explore the Exact Bootstrap Method |
| exactci | Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases |
| ExactCIdiff | Inductive Confidence Intervals for the Difference Between Two Proportions |
| ExactCIone | Admissible Exact Intervals for One-Dimensional Discrete Distributions |
| ExactCox | Exact Test and Exact Confidence Interval for the Cox Model |
| exactextractr | Fast Extraction from Raster Datasets using Polygons |
| exactLTRE | An Exact Method for Life Table Response Experiment (LTRE) Analysis |
| ExactMed | Exact Mediation Analysis for Binary Outcomes |
| ExactMultinom | Multinomial Goodness-of-Fit Tests |
| exactRankTests | Exact Distributions for Rank and Permutation Tests |
| ExamPAData | Data Sets for Predictive Analytics Exam |
| exampletestr | Help for Writing Unit Tests Based on Function Examples |
| exams | Automatic Generation of Exams in R |
| exams.forge | Support for Compiling Examination Tasks using the 'exams' Package |
| exams.mylearn | Question Generation in the 'MyLearn' XML Format |
| exams2learnr | Interface for 'exams' Exercises in 'learnr' Tutorials |
| exams2sakai | Automatic Generation of Exams in R for 'Sakai' |
| ExceedanceTools | Confidence/Credible Regions for Exceedance Sets and Contour Lines |
| exceedProb | Confidence Intervals for Exceedance Probability |
| excel.link | Convenient Data Exchange with Microsoft Excel |
| excel2eprime | Split Sentences by Factors |
| exceldata | Streamline Data Import, Cleaning and Recoding from 'Excel' |
| ExcelFunctionsR | Imports Excel Functions to R |
| excelR | A Wrapper of the 'JavaScript' Library 'jExcel' |
| ExcessMass | Excess Mass Calculation and Plots |
| excessmort | Excess Mortality |
| excluder | Checks for Exclusion Criteria in Online Data |
| ExclusionTable | Creating Tables of Excluded Observations |
| exCon | Interactive Exploration of Contour Data |
| excursions | Excursion Sets and Contour Credibility Regions for Random Fields |
| exdex | Estimation of the Extremal Index |
| exdqlm | Extended Dynamic Quantile Linear Models |
| executablePackeR | Make 'shiny' App to Executable Program |
| ExGaussEstim | Quantile Maximization Likelihood Estimation and Bayesian Ex-Gaussian Estimation |
| ExhaustiveSearch | A Fast and Scalable Exhaustive Feature Selection Framework |
| exif | Read EXIF Metadata from JPEGs |
| exifr | EXIF Image Data in R |
| exiftoolr | ExifTool Functionality from R |
| ExNRuleEnsemble | A k Nearest Neibour Ensemble Based on Extended Neighbourhood Rule |
| ExpAnalysis3d | Pacote Para Analise De Experimentos Com Graficos De Superficie Resposta |
| ExPanDaR | Explore Your Data Interactively |
| expandFunctions | Feature Matrix Builder |
| EXPAR | Fitting of Exponential Autoregressive (EXPAR) Model |
| EXPARMA | Fitting of Exponential Autoregressive Moving Average (EXPARMA) Model |
| expDB | Database for Experiment Dataset |
| ExpDE | Modular Differential Evolution for Experimenting with Operators |
| ExpDes | Experimental Designs Package |
| ExpDes.pt | Pacote Experimental Designs (Portugues) |
| expectreg | Expectile and Quantile Regression |
| experDesign | Design Experiments for Batches |
| experiences | Experience Research |
| experiment | R Package for Designing and Analyzing Randomized Experiments |
| experimentr | Datasets Used in Social Science Experiments: A Hands-on Introduction |
| ExpertChoice | Design of Discrete Choice and Conjoint Analysis |
| ExpGenetic | Non-Additive Expression Analysis of Hybrid Offspring |
| ExpImage | Analysis of Images in Experiments |
| expint | Exponential Integral and Incomplete Gamma Function |
| expirest | Expiry Estimation Procedures |
| explainer | Machine Learning Model Explainer |
| ExplainPrediction | Explanation of Predictions for Classification and Regression Models |
| ExplodeLayout | Calculate Exploded Coordinates Based on Original Node Coordinates and Node Clustering Membership |
| explor | Interactive Interfaces for Results Exploration |
| exploratory | A Tool for Large-Scale Exploratory Analyses |
| explore | Simplifies Exploratory Data Analysis |
| exploreR | Tools for Quickly Exploring Data |
| expm | Matrix Exponential, Log, 'etc' |
| export | Streamlined Export of Graphs and Data Tables |
| ExPosition | Exploratory Analysis with the Singular Value Decomposition |
| ExposR | Models Topographic Exposure to Hurricane Winds |
| expowo | Data Mining of Plant Diversity and Distribution |
| expperm | Computing Expectations and Marginal Likelihoods for Permutations |
| ExpRep | Experiment Repetitions |
| expSBM | An Exponential Stochastic Block Model for Interaction Lengths |
| expsmooth | Data Sets from "Forecasting with Exponential Smoothing" |
| expss | Tables, Labels and Some Useful Functions from Spreadsheets and 'SPSS' Statistics |
| expstudy | Tools for Actuarial Experience Studies |
| exreport | Fast, Reliable and Elegant Reproducible Research |
| EXRQ | Extreme Regression of Quantiles |
| extBatchMarking | Extended Batch Marking Models |
| ExtDist | Extending the Range of Functions for Probability Distributions |
| extendedFamily | Additional Families for Generalized Linear Models |
| exteriorMatch | Constructs the Exterior Match from Two Matched Control Groups |
| extlasso | Maximum Penalized Likelihood Estimation with Extended Lasso Penalty |
| ExtMallows | An Extended Mallows Model and Its Hierarchical Version for Ranked Data Aggregation |
| ExtractTrainData | Extract Values from Raster |
| extraDistr | Additional Univariate and Multivariate Distributions |
| extrafont | Tools for Using Fonts |
| extrafontdb | Package for holding the database for the extrafont package |
| extrafrail | Estimation and Additional Tools for Alternative Shared Frailty Models |
| extraoperators | Extra Binary Relational and Logical Operators |
| extras | Helper Functions for Bayesian Analyses |
| extrasteps | More Miscellaneous Steps for the 'recipes' Package |
| extraterrestrial | Astrobiology Equations Estimating Extraterrestrial Life |
| extRatum | Summary Statistics for Geospatial Features |
| extRC | Extended RC Models for Contingency Tables |
| ExtremalDep | Extremal Dependence Models |
| ExtremeBounds | Extreme Bounds Analysis (EBA) |
| extremefit | Estimation of Extreme Conditional Quantiles and Probabilities |
| extremeIndex | Forecast Verification for Extreme Events |
| extrememix | Bayesian Estimation of Extreme Value Mixture Models |
| ExtremeRisks | Extreme Risk Measures |
| extRemes | Extreme Value Analysis |
| extremeStat | Extreme Value Statistics and Quantile Estimation |
| extremevalues | Univariate Outlier Detection |
| extremis | Statistics of Extremes |
| extremogram | Estimation of Extreme Value Dependence for Time Series Data |
| ExtrPatt | Spatial Dependencies and Indices for Extremes |
| exuber | Econometric Analysis of Explosive Time Series |
| exvatools | Value Added in Exports and Other Input-Output Table Analysis Tools |
| eye | Analysis of Eye Data |
| eyedata | Open Source Ophthalmic Data Sets Curated for R |
| eyelinker | Import ASC Files from EyeLink Eye Trackers |
| eyelinkReader | Import Gaze Data for EyeLink Eye Tracker |
| eyeRead | Prepare/Analyse Eye Tracking Data for Reading |
| eyetrackingR | Eye-Tracking Data Analysis |
| eyeTrackR | Organising and Analysing Eye-Tracking Data |
| ez | Easy Analysis and Visualization of Factorial Experiments |
| ez.combat | Easy ComBat Harmonization |
| ezcox | Easily Process a Batch of Cox Models |
| ezCutoffs | Fit Measure Cutoffs in SEM |
| ezec | Easy Interface to Effective Concentration Calculations |
| ezEDA | Task Oriented Interface for Exploratory Data Analysis |
| EzGP | Easy-to-Interpret Gaussian Process Models for Computer Experiments |
| ezknitr | Avoid the Typical Working Directory Pain When Using 'knitr' |
| ezmmek | Easy Michaelis-Menten Enzyme Kinetics |
| ezplot | Functions for Common Chart Types |
| ezr | Easy Use of R via Shiny App for Basic Analyses of Experimental Data |
| EZtune | Tunes AdaBoost, Elastic Net, Support Vector Machines, and Gradient Boosting Machines |
| f1dataR | Access Formula 1 Data |
| FaaSr | FaaS (Function as a Service) Package |
| fabCI | FAB Confidence Intervals |
| FABInference | FAB p-Values and Confidence Intervals |
| fabisearch | Change Point Detection in High-Dimensional Time Series Networks |
| fable | Forecasting Models for Tidy Time Series |
| fable.ata | 'ATAforecasting' Modelling Interface for 'fable' Framework |
| fable.prophet | Prophet Modelling Interface for 'fable' |
| fableCount | INGARCH and GLARMA Models for Count Time Series in Fable Framework |
| fabletools | Core Tools for Packages in the 'fable' Framework |
| fabMix | Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components |
| fabPrediction | Compute FAB (Frequentist and Bayes) Conformal Prediction Intervals |
| fabR | Wrapper Functions Collection Used in Data Pipelines |
| fabricatr | Imagine Your Data Before You Collect It |
| fabricerin | Create Easily Canvas in 'shiny' and 'RMarkdown' Documents |
| face | Fast Covariance Estimation for Sparse Functional Data |
| facebookadsR | Access to Facebook Ads via the 'Windsor.ai' API |
| facebookleadsR | Get Facebook Leads Ads Data via the 'Windsor.ai' API |
| facebookorganicR | Get Data from 'Facebook Organic' via the 'Windsor.ai' API |
| facerec | An Interface for Face Recognition |
| facmodCS | Cross-Section Factor Models |
| facmodTS | Time Series Factor Models for Asset Returns |
| FACT | Feature Attributions for ClusTering |
| factiv | Instrumental Variables Estimation for 2^k Factorial Experiments |
| FACTMLE | Maximum Likelihood Factor Analysis |
| FactoClass | Combination of Factorial Methods and Cluster Analysis |
| factoextra | Extract and Visualize the Results of Multivariate Data Analyses |
| FactoInvestigate | Automatic Description of Factorial Analysis |
| FactoMineR | Multivariate Exploratory Data Analysis and Data Mining |
| factoptd | Factorial Optimal Designs for Two-Colour cDNA Microarray Experiments |
| factor.switching | Post-Processing MCMC Outputs of Bayesian Factor Analytic Models |
| factor256 | Use Raw Vectors to Minimize Memory Consumption of Factors |
| FactorAssumptions | Set of Assumptions for Factor and Principal Component Analysis |
| FactorCopula | Factor, Bi-Factor, Second-Order and Factor Tree Copula Models |
| factorial2x2 | Design and Analysis of a 2x2 Factorial Trial |
| factormodel | Factor Model Estimation Using Proxy Variables |
| factorplot | Presenting Pairwise Comparisons |
| factorstochvol | Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models |
| factory | Build Function Factories |
| Factoshiny | Perform Factorial Analysis from 'FactoMineR' with a Shiny Application |
| factReg | Multi-Environment Genomic Prediction with Penalized Factorial Regression |
| factset.analyticsapi.engines | 'FactSet' Engines API Client |
| factset.protobuf.stach.v2 | 'FactSet' 'STACH V2' Library |
| factset.protobuf.stachextensions | 'FactSet' 'STACH' Extensions Package |
| fad | Factor Analysis for Data |
| FADA | Variable Selection for Supervised Classification in High Dimension |
| FAdist | Distributions that are Sometimes Used in Hydrology |
| FADPclust | Functional Data Clustering Using Adaptive Density Peak Detection |
| faersquarterlydata | FDA Adverse Event Reporting System Quarterly Data Extracting Tool |
| FAfA | Factor Analysis for All |
| Fahrmeir | Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz |
| fail | File Abstraction Interface Layer (FAIL) |
| fairadapt | Fair Data Adaptation with Quantile Preservation |
| FAIRmaterials | Ontology Tools with Data FAIRification in Development |
| FairMclus | Clustering for Data with Sensitive Attribute |
| fairml | Fair Models in Machine Learning |
| fairmodels | Flexible Tool for Bias Detection, Visualization, and Mitigation |
| fairness | Algorithmic Fairness Metrics |
| fairsubset | Choose Representative Subsets |
| fake | Flexible Data Simulation Using the Multivariate Normal Distribution |
| fakemake | Mock the Unix Make Utility |
| fakir | Generate Fake Datasets for Prototyping and Teaching |
| fakmct | Fuzzy Adaptive Resonance Theory K-Means Clustering Technique |
| falcon | Finding Allele-Specific Copy Number in Next-Generation Sequencing Data |
| falconx | Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data |
| fam.recrisk | Familial Recurrence Risk |
| FAMetA | Fatty Acid Metabolic Analysis |
| FamEvent | Family Age-at-Onset Data Simulation and Penetrance Estimation |
| familial | Statistical Tests of Familial Hypotheses |
| familiar | End-to-End Automated Machine Learning and Model Evaluation |
| Familias | Probabilities for Pedigrees Given DNA Data |
| Families | Kinship Ties in (Virtual) Multi-Generation Populations |
| FamilyRank | Algorithm for Ranking Predictors Using Graphical Domain Knowledge |
| FAmle | Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions |
| FAMoS | A Flexible Algorithm for Model Selection |
| famSKATRC | Family Sequence Kernel Association Test for Rare and Common Variants |
| FAMT | Factor Analysis for Multiple Testing (FAMT) : Simultaneous Tests under Dependence in High-Dimensional Data |
| fanc | Penalized Likelihood Factor Analysis via Nonconvex Penalty |
| fANCOVA | Nonparametric Analysis of Covariance |
| fancycut | A Fancy Version of 'base::cut' |
| fangs | Feature Allocation Neighborhood Greedy Search Algorithm |
| fanovaGraph | Building Kriging Models from FANOVA Graphs |
| fanplot | Visualisation of Sequential Probability Distributions Using Fan Charts |
| fansi | ANSI Control Sequence Aware String Functions |
| fanyi | Translate Words or Sentences via Online Translators |
| FAO56 | Evapotranspiration Based on FAO Penman-Monteith Equation |
| FAOSTAT | Download Data from the FAOSTAT Database |
| faoutlier | Influential Case Detection Methods for Factor Analysis and Structural Equation Models |
| faq | Create FAQ Page |
| far | Modelization for Functional AutoRegressive Processes |
| faraway | Functions and Datasets for Books by Julian Faraway |
| FARDEEP | Fast and Robust Deconvolution of Tumor Infiltrating Lymphocyte from Expression Profiles using Least Trimmed Squares |
| farff | A Faster 'ARFF' File Reader and Writer |
| FarmSelect | Factor Adjusted Robust Model Selection |
| FarmTest | Factor-Adjusted Robust Multiple Testing |
| farr | Data and Code for Financial Accounting Research |
| farrell | Interactive Interface to Data Envelopment Analysis Modeling |
| farver | High Performance Colour Space Manipulation |
| FAS | Factor-Augmented Sparse Regression Tuning-Free Testing |
| fasano.franceschini.test | Fasano-Franceschini Test: A Multivariate Kolmogorov-Smirnov Two-Sample Test |
| fase | Functional Adjacency Spectral Embedding |
| FASeg | Joint Segmentation of Correlated Time Series |
| fasjem | A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models |
| fAssets | Rmetrics - Analysing and Modelling Financial Assets |
| fasstr | Analyze, Summarize, and Visualize Daily Streamflow Data |
| FAST.R | Analyze and Visualize FAST-Generated Data |
| fasta | Fast Adaptive Shrinkage/Thresholding Algorithm |
| fastadi | Self-Tuning Data Adaptive Matrix Imputation |
| fastAFT | Fast Regression for the Accelerated Failure Time (AFT) Model |
| fastai | Interface to 'fastai' |
| fastbackward | Fast Backward Elimination Based on Information Criterion |
| FastBandChol | Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor |
| fastbeta | Fast Approximation of Time-Varying Infectious Disease Transmission Rates |
| fastcluster | Fast Hierarchical Clustering Routines for R and 'Python' |
| fastcmh | Significant Interval Discovery with Categorical Covariates |
| fastcmprsk | Fine-Gray Regression via Forward-Backward Scan |
| fastcox | Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Models using the Cocktail Algorithm |
| fastcpd | Fast Change Point Detection via Sequential Gradient Descent |
| FastCUB | Fast Estimation of CUB Models via Louis' Identity |
| fastdigest | Fast, Low Memory Footprint Digests of R Objects |
| fastDummies | Fast Creation of Dummy (Binary) Columns and Rows from Categorical Variables |
| fasterElasticNet | An Amazing Fast Way to Fit Elastic Net |
| fasterize | Fast Polygon to Raster Conversion |
| fastFMM | Fast Functional Mixed Models using Fast Univariate Inference |
| FastGaSP | Fast and Exact Computation of Gaussian Stochastic Process |
| fastGHQuad | Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature |
| fastGLCM | 'GLCM' Texture Features |
| fastglm | Fast and Stable Fitting of Generalized Linear Models using 'RcppEigen' |
| fastglmpca | Fast Algorithms for Generalized Principal Component Analysis |
| FastGP | Efficiently Using Gaussian Processes with Rcpp and RcppEigen |
| fastGraph | Fast Drawing and Shading of Graphs of Statistical Distributions |
| fastICA | FastICA Algorithms to Perform ICA and Projection Pursuit |
| FastImputation | Learn from Training Data then Quickly Fill in Missing Data |
| FastJM | Semi-Parametric Joint Modeling of Longitudinal and Survival Data |
| fastJT | Efficient Jonckheere-Terpstra Test Statistics |
| FastKM | A Fast Multiple-Kernel Method Based on a Low-Rank Approximation |
| fastkmedoids | Faster K-Medoids Clustering Algorithms: FastPAM, FastCLARA, FastCLARANS |
| FastKNN | Fast k-Nearest Neighbors |
| fastkqr | A Fast Algorithm for Kernel Quantile Regression |
| fastLink | Fast Probabilistic Record Linkage with Missing Data |
| fastliu | Fast Functions for Liu Regression with Regularization Parameter and Statistics |
| fastLogisticRegressionWrap | Fast Logistic Regression Wrapper |
| fastlogitME | Basic Marginal Effects for Logit Models |
| fastM | Fast Computation of Multivariate M-Estimators |
| fastmap | Fast Data Structures |
| fastmatch | Fast 'match()' Function |
| fastmatrix | Fast Computation of some Matrices Useful in Statistics |
| fastmit | Fast Mutual Information Based Independence Test |
| fastNaiveBayes | Extremely Fast Implementation of a Naive Bayes Classifier |
| fastnet | Large-Scale Social Network Analysis |
| fastOnlineCpt | Online Multivariate Changepoint Detection |
| FastPCS | FastPCS Robust Fit of Multivariate Location and Scatter |
| fastplyr | Fast Alternatives to 'tidyverse' Functions |
| fastpng | Read and Write PNG Files with Configurable Decoder/Encoder Options |
| fastpos | Finds the Critical Sequential Point of Stability for a Pearson Correlation |
| fastqcr | Quality Control of Sequencing Data |
| fastqq | Faster Generation of Quantile Quantile Plots with Large Samples |
| fastR2 | Foundations and Applications of Statistics Using R (2nd Edition) |
| FastRCS | Fits the FastRCS Robust Multivariable Linear Regression Model |
| fastrep | Time-Saving Package for Creating Reports |
| fastRG | Sample Generalized Random Dot Product Graphs in Linear Time |
| fastRhockey | Functions to Access Premier Hockey Federation and National Hockey League Play by Play Data |
| fastrmodels | Models for the 'nflfastR' Package |
| FastRWeb | Fast Interactive Framework for Web Scripting Using R |
| FastSF | Fast Structural Filtering |
| fastshap | Fast Approximate Shapley Values |
| fastSOM | Fast Calculation of Spillover Measures |
| FastStepGraph | A Fast Algorithm for Sparse Precision Matrix Estimation |
| fastText | Efficient Learning of Word Representations and Sentence Classification |
| fastTextR | An Interface to the 'fastText' Library |
| fasttime | Fast Utility Function for Time Parsing and Conversion |
| fastTopics | Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data |
| fastTS | Fast Time Series Modeling for Seasonal Series with Exogenous Variables |
| FastUtils | Fast, Readable Utility Functions |
| fastverse | A Suite of High-Performance Packages for Statistics and Data Manipulation |
| fastWavelets | Compute Maximal Overlap Discrete Wavelet Transform (MODWT) and À Trous Discrete Wavelet Transform |
| fat2Lpoly | Two-Locus Family-Based Association Test with Polytomous Outcome |
| FateID | Quantification of Fate Bias in Multipotent Progenitors |
| FatTailsR | Kiener Distributions and Fat Tails in Finance |
| FaultTree | Fault Trees for Risk and Reliability Analysis |
| faux | Simulation for Factorial Designs |
| fauxnaif | Convert Values to NA |
| fauxpas | HTTP Error Helpers |
| FAVAR | Bayesian Analysis of a FAVAR Model |
| faviconPlease | Find the URL to the 'Favicon' for a Website |
| favnums | A Dataset of Favourite Numbers |
| FAwR | Functions and Datasets for "Forest Analytics with R" |
| fbar | An Extensible Approach to Flux Balance Analysis |
| fBasics | Rmetrics - Markets and Basic Statistics |
| fbati | Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families |
| FBCRM | Phase I Optimal Dose Assignment using the FBCRM and MFBCRM Methods |
| FBFsearch | Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors |
| FBMS | Flexible Bayesian Model Selection and Model Averaging |
| FBN | FISH Based Normalization and Copy Number Inference of SNP Microarray Data |
| fbnet | Forensic Bayesian Networks |
| fBonds | Rmetrics - Pricing and Evaluating Bonds |
| fbRads | Analyzing and Managing Facebook Ads from R |
| fbroc | Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves |
| fbst | The Full Bayesian Evidence Test, Full Bayesian Significance Test and the e-Value |
| fc | Standard Evaluation-Based Multivariate Function Composition |
| fca | Floating Catchment Area (FCA) Methods to Calculate Spatial Accessibility |
| fcaR | Formal Concept Analysis |
| fcci | Feldman-Cousins Confidence Intervals |
| fcfdr | Flexible cFDR |
| fcirt | Forced Choice in Item Response Theory |
| fcl | A Financial Calculator |
| fclust | Fuzzy Clustering |
| fcm | Inference of Fuzzy Cognitive Maps (FCMs) |
| FCMapper | Fuzzy Cognitive Mapping |
| FCO | Flexible Cutoffs for Model Fit Evaluation in Covariance-Based Structural Models |
| fCopulae | Rmetrics - Bivariate Dependence Structures with Copulae |
| fcp | Function Composition |
| FCPS | Fundamental Clustering Problems Suite |
| fcr | Functional Concurrent Regression for Sparse Data |
| fcros | A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations |
| fctbases | Functional Bases |
| fctutils | Advanced Factor Manipulation Utilities |
| fcuk | The Ultimate Helper for Clumsy Fingers |
| FCVAR | Estimation and Inference for the Fractionally Cointegrated VAR |
| FD | Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology |
| fda | Functional Data Analysis |
| fda.usc | Functional Data Analysis and Utilities for Statistical Computing |
| fdaACF | Autocorrelation Function for Functional Time Series |
| fdacluster | Joint Clustering and Alignment of Functional Data |
| fdaconcur | Concurrent Regression and History Index Models for Functional Data |
| fdadensity | Functional Data Analysis for Density Functions by Transformation to a Hilbert Space |
| fdaMixed | Functional Data Analysis in a Mixed Model Framework |
| fdaMocca | Model-Based Clustering for Functional Data with Covariates |
| fdANOVA | Analysis of Variance for Univariate and Multivariate Functional Data |
| fdaoutlier | Outlier Detection Tools for Functional Data Analysis |
| fdapace | Functional Data Analysis and Empirical Dynamics |
| fdapaceShiny | A Shiny App for the 'fdapace' Package |
| fdaPDE | Physics-Informed Spatial and Functional Data Analysis |
| fdaPOIFD | Partially Observed Integrated Functional Depth |
| fdarep | Two-Dimensional FPCA, Marginal FPCA, and Product FPCA for Repeated Functional Data |
| fdaSP | Sparse Functional Data Analysis Methods |
| fdasrvf | Elastic Functional Data Analysis |
| fdatest | Interval Testing Procedure for Functional Data |
| FDboost | Boosting Functional Regression Models |
| fddm | Fast Implementation of the Diffusion Decision Model |
| fdesigns | Optimal Experimental Designs for Functional/Dynamic Models |
| fdicdata | Accessing FDIC Bank Data |
| fdm2id | Data Mining and R Programming for Beginners |
| fDMA | Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes |
| fdq | Forest Data Quality |
| fdrci | Permutation-Based FDR Point and Confidence Interval Estimation |
| fdrDiscreteNull | False Discovery Rate Procedures Under Discrete and Heterogeneous Null Distributions |
| FDRestimation | Estimate, Plot, and Summarize False Discovery Rates |
| FDRsamplesize2 | Computing Power and Sample Size for the False Discovery Rate in Multiple Applications |
| FDRsampsize | Compute Sample Size that Meets Requirements for Average Power and FDR |
| fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |
| fds | Functional Data Sets |
| fdth | Frequency Distribution Tables, Histograms and Polygons |
| fdWasserstein | Application of Optimal Transport to Functional Data Analysis |
| FDX | False Discovery Exceedance Controlling Multiple Testing Procedures |
| FEA | Finite Element Modeling for R |
| FeaLect | Scores Features for Feature Selection |
| feasts | Feature Extraction and Statistics for Time Series |
| feather | R Bindings to the Feather 'API' |
| feature | Local Inferential Feature Significance for Multivariate Kernel Density Estimation |
| featureCorMatrix | Measurement Level Independent Feature Correlation Matrix |
| FeatureExtraction | Generating Features for a Cohort |
| featurefinder | Feature Finder |
| featureflag | Turn Features On and Off using Feature Flags |
| FeatureHashing | Creates a Model Matrix via Feature Hashing with a Formula Interface |
| FeatureImpCluster | Feature Importance for Partitional Clustering |
| features | Feature Extraction for Discretely-Sampled Functional Data |
| FeatureTerminatoR | Feature Selection Engine to Remove Features with Minimal Predictive Power |
| featurizer | Some Helper Functions that Help Create Features from Data |
| fec16 | Data Package for the 2016 United States Federal Elections |
| fechner | Fechnerian Scaling of Discrete Object Sets |
| fect | Fixed Effects Counterfactuals |
| federalregister | Client Package for the U.S. Federal Register API |
| FedIRT | Federated Item Response Theory Models |
| fedmatch | Fast, Flexible, and User-Friendly Record Linkage Methods |
| fedregs | Text Analysis of the US Code of Federal Regulations |
| fedstatAPIr | Unofficial API for Fedstat (Rosstat EMISS System) for Automatic and Efficient Data Queries |
| fedz1 | An Easier Access to Financial Accounts of the United States(Z.1) |
| FeedbackTS | Analysis of Feedback in Time Series |
| feisr | Estimating Fixed Effects Individual Slope Models |
| felp | Functional Help for Functions, Objects, and Packages |
| feltr | Access the Felt API |
| fence | Using Fence Methods for Model Selection |
| FENmlm | Fixed Effects Nonlinear Maximum Likelihood Models |
| FEprovideR | Fixed Effects Logistic Model with High-Dimensional Parameters |
| FER | Financial Engineering in R |
| fergm | Estimation and Fit Assessment of Frailty Exponential Random Graph Models |
| fermicatsR | Fermi Large Area Telescope Catalogs |
| ferrn | Facilitate Exploration of touRR optimisatioN |
| FertBoot | Fertilizer Response Curve Analysis by Bootstrapping Residuals |
| fertilmodel | Fertility Models |
| FertNet | Process Data from the Social Networks and Fertility Survey |
| FESta | Fishing Effort Standardisation |
| fetch | Fetch Data from Various Data Sources |
| fetchGoogleAnalyticsR | Get Data from Google Analytics via the 'Windsor.ai' API |
| fetchSalesforceR | Get Data from Salesforce via the 'Windsor.ai' API |
| fExtremes | Rmetrics - Modelling Extreme Events in Finance |
| ff | Memory-Efficient Storage of Large Data on Disk and Fast Access Functions |
| FFD | Freedom from Disease |
| FFdownload | Download Data from Kenneth French's Website |
| ffmanova | Fifty-Fifty MANOVA |
| ffp | Fully Flexible Probabilities for Stress Testing and Portfolio Construction |
| ffscrapr | API Client for Fantasy Football League Platforms |
| FFTrees | Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees |
| fftw | Fast FFT and DCT Based on the FFTW Library |
| fftwtools | Wrapper for 'FFTW3' Includes: One-Dimensional, Two-Dimensional, Three-Dimensional, and Multivariate Transforms |
| FGalgorithm | Flury and Gautschi algorithms |
| fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |
| fgdr | Utilities for Fundamental Geo-Spatial Data |
| fgeo | Analyze Forest Diversity and Dynamics |
| fgeo.analyze | Analyze ForestGEO Data |
| fgeo.plot | Plot ForestGEO Data |
| fgeo.tool | Import and Manipulate 'ForestGEO' Data |
| fgeo.x | Access Small ForestGEO Datasets For Examples |
| fgitR | Using 'FastGit' to Accelerate the Access to 'GitHub' |
| FGLMtrunc | Truncated Functional Generalized Linear Models |
| fglsnet | A Feasible Generalized Least Squares Estimator for Regression Analysis of Outcomes with Network Dependence |
| fgm | Partial Separability and Functional Gaussian Graphical Models |
| Fgmutils | Forest Growth Model Utilities |
| fgui | Function GUI |
| FHDI | Fractional Hot Deck and Fully Efficient Fractional Imputation |
| fhircrackr | Handling HL7 FHIR® Resources in R |
| fHMM | Fitting Hidden Markov Models to Financial Data |
| FHtest | Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class |
| FI | Provide functions for forest inventory calculations |
| fiberLD | Fiber Length Determination |
| fic | Focused Information Criteria for Model Comparison |
| fICA | Classical, Reloaded and Adaptive FastICA Algorithms |
| fidelius | Browser-Side Password-Protected HTML Documents |
| fido | Bayesian Multinomial Logistic Normal Regression |
| FielDHub | A Shiny App for Design of Experiments in Life Sciences |
| fields | Tools for Spatial Data |
| FieldSimR | Simulation of Plot Errors and Phenotypes in Plant Breeding Field Trials |
| fiery | A Lightweight and Flexible Web Framework |
| FIESTA | Forest Inventory Estimation and Analysis |
| FIESTAutils | Utility Functions for Forest Inventory Estimation and Analysis |
| fig | A Config Package with No "Con" |
| figir | Check Validity of FIGI, CUSIP, ISIN, SEDOL |
| figma | Web Client/Wrapper to the 'Figma API' |
| figpatch | Easily Arrange External Figures with Patchwork Alongside 'ggplot2' Figures |
| figuRes2 | Support for a Variety of Figure Production Tasks |
| file2meco | Transform Files to 'microtable' Object with 'microeco' Package |
| filearray | File-Backed Array for Out-of-Memory Computation |
| filebin | Wrapper for the Filebin File Sharing API |
| filecacher | File Cacher |
| filehash | Simple Key-Value Database |
| filehashSQLite | Simple Key-Value Database using SQLite |
| filelock | Portable File Locking |
| filematrix | File-Backed Matrix Class with Convenient Read and Write Access |
| filenamer | Easy Management of File Names |
| files | Effective File Navigation from the R Console |
| filesstrings | Handy File and String Manipulation |
| FILEST | Fine-Level Structure Simulator |
| filling | Matrix Completion, Imputation, and Inpainting Methods |
| fillpattern | Patterned Fills for 'ggplot2' and 'grid' Graphics |
| fillr | Fill Missing Values in Vectors |
| FilmsGmooG | IMDb Film Ratings from the Summer of 2022 |
| filterNHP | Non-Human Primate Search Filters |
| filters | A "Snake_case" Filter System for R |
| fImport | Rmetrics - Importing Economic and Financial Data |
| finalfit | Quickly Create Elegant Regression Results Tables and Plots when Modelling |
| finalsize | Calculate the Final Size of an Epidemic |
| FinAna | Financial Analysis and Regression Diagnostic Analysis |
| FinancialInstrument | Financial Instrument Model Infrastructure and Meta-Data |
| FinancialMath | Financial Mathematics for Actuaries |
| finbif | Interface for the 'Finnish Biodiversity Information Facility' API |
| finbipartite | Learning Bipartite Graphs: Heavy Tails and Multiple Components |
| FinCal | Time Value of Money, Time Series Analysis and Computational Finance |
| finch | Parse Darwin Core Files |
| FinCovRegularization | Covariance Matrix Estimation and Regularization for Finance |
| findGSEP | Estimate Genome Size of Polyploid Species Using k-Mer Frequencies |
| findInFiles | Find Pattern in Files |
| findInGit | Find Pattern in Files of All Branches of a 'git' Repository |
| FindIt | Finding Heterogeneous Treatment Effects |
| findPackage | Find 'CRAN' Package by Topic |
| findpython | Functions to Find an Acceptable Python Binary |
| findR | Find Code Snippets, R Scripts, R Markdown, PDF and Text Files with Pattern Matching |
| findSVI | Calculate Social Vulnerability Index for Communities |
| findviews | A View Generator for Multidimensional Data |
| FinePop | Fine-Scale Population Analysis |
| FinePop2 | Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis) |
| finetune | Additional Functions for Model Tuning |
| fingerprint | Functions to Operate on Binary Fingerprint Data |
| fingerPro | Sediment Source Fingerprinting |
| fingraph | Learning Graphs for Financial Markets |
| finiteruinprob | Computation of the Probability of Ruin Within a Finite Time Horizon |
| finity | Test for Finiteness of Moments in a Distribution |
| FinNet | Quickly Build and Manipulate Financial Networks |
| finnishgrid | 'Fingrid Open Data API' R Client |
| finnsurveytext | Analyse Open-Ended Survey Responses in Finnish |
| finnts | Microsoft Finance Time Series Forecasting Framework |
| finreportr | Financial Data from U.S. Securities and Exchange Commission |
| FinTS | Companion to Tsay (2005) Analysis of Financial Time Series |
| fio | Friendly Input-Output Analysis |
| fipio | Lightweight Federal Information Processing System (FIPS) Code Information Retrieval |
| fipp | Induced Priors in Bayesian Mixture Models |
| FiRE | Finder of Rare Entities (FiRE) |
| firebase | Integrates 'Google Firebase' Authentication Storage, and 'Analytics' with 'Shiny' |
| firebehavioR | Prediction of Wildland Fire Behavior and Hazard |
| first | Factor Importance Ranking and Selection using Total Indices |
| FiSh | Fisher-Shannon Method |
| fishbc | Fishes of British Columbia |
| fishdata | A Small Collection of Fish Population Datasets |
| FisherEM | The FisherEM Algorithm to Simultaneously Cluster and Visualize High-Dimensional Data |
| fisheye | Transform Base Maps Using Log-Azimuthal Projection |
| fishkirkko2015 | Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland |
| fishmethods | Fishery Science Methods and Models |
| fishMod | Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models |
| FishPhyloMaker | Phylogenies for a List of Finned-Ray Fishes |
| FishProxCompAnalyzer | Proximate Composition Analysis of Fish and Feed Ingredients |
| FishResp | Analytical Tool for Aquatic Respirometry |
| fishRman | The Fisheries Scientist's Toolbox |
| fishtree | Interface to the Fish Tree of Life API |
| fishualize | Color Palettes Based on Fish Species |
| FisPro | Fuzzy Inference System Design and Optimization |
| FIT | Transcriptomic Dynamics Models in Field Conditions |
| fit.models | Compare Fitted Models |
| fitbitr | Interface with the 'Fitbit' API |
| fitbitScraper | Scrapes Data from Fitbit |
| fitbitViz | 'Fitbit' Visualizations |
| fitConic | Fit Data to Any Conic Section |
| fitdistrplus | Help to Fit of a Parametric Distribution to Non-Censored or Censored Data |
| FitDynMix | Estimation of Dynamic Mixtures |
| fitHeavyTail | Mean and Covariance Matrix Estimation under Heavy Tails |
| fitlandr | Fit Vector Fields and Potential Landscapes from Intensive Longitudinal Data |
| fitmix | Finite Mixture Model Fitting of Lifespan Datasets |
| fitODBOD | Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD |
| fitODBODRshiny | 'Shiny' Application for R Package 'fitODBOD' |
| fitode | Tools for Ordinary Differential Equations Model Fitting |
| fitplc | Fit Hydraulic Vulnerability Curves |
| fitPoly | Genotype Calling for Bi-Allelic Marker Assays |
| fitPS | Fit Zeta Distributions to Forensic Data |
| fitscape | Classes for Fitness Landscapes and Seascapes |
| FITSio | FITS (Flexible Image Transport System) Utilities |
| fitteR | Fit Hundreds of Theoretical Distributions to Empirical Data |
| FitUltD | Fit Univariate Mixed and Usual Distributions |
| fitur | Fit Univariate Distributions |
| fitzRoy | Easily Scrape and Process AFL Data |
| fivethirtyeight | Data and Code Behind the Stories and Interactives at 'FiveThirtyEight' |
| FixedPoint | Algorithms for Finding Fixed Point Vectors of Functions |
| fixedpointproperty | Determine and Test the Fixed-Point Property in Binary Mixture Data |
| fixedTimeEvents | The Distribution of Distances Between Discrete Events in Fixed Time |
| fixerapi | An R Client for the "Fixer.io" Currency API |
| fixest | Fast Fixed-Effects Estimations |
| fixr | Fixing Data Made Easy for Statistical Analysis |
| FixSeqMTP | Fixed Sequence Multiple Testing Procedures |
| fixtuRes | Mock Data Generator |
| fizzbuzzR | Fizz Buzz Implementation |
| FjordLight | Available Light Within the Water Column and on the Seafloor of Arctic Fjords |
| FKF | Fast Kalman Filter |
| FKF.SP | Fast Kalman Filtering Through Sequential Processing |
| FKSUM | Fast Kernel Sums |
| flacco | Feature-Based Landscape Analysis of Continuous and Constrained Optimization Problems |
| flagr | Implementation of Flag Aggregation |
| flam | Fits Piecewise Constant Models with Data-Adaptive Knots |
| FLAME | Interpretable Matching for Causal Inference |
| flametree | Generate Random Tree-Like Images |
| flamingos | Functional Latent Data Models for Clustering Heterogeneous Curves ('FLaMingos') |
| flan | FLuctuation ANalysis on Mutation Models |
| flap | Forecast Linear Augmented Projection |
| flare | Family of Lasso Regression |
| flashCard | Create a Flash Card |
| flashClust | Implementation of optimal hierarchical clustering |
| flashier | Empirical Bayes Matrix Factorization |
| flashlight | Shed Light on Black Box Machine Learning Models |
| flashr | Create Flashcards of Terms and Definitions |
| flatr | Transforms Contingency Tables to Data Frames, and Analyses Them |
| flattabler | Obtaining a Flat Table from Pivot Tables |
| flatxml | Tools for Working with XML Files as R Dataframes |
| fledge | Smoother Change Tracking and Versioning for R Packages |
| flevr | Flexible, Ensemble-Based Variable Selection with Potentially Missing Data |
| flexclust | Flexible Cluster Algorithms |
| flexCWM | Flexible Cluster-Weighted Modeling |
| flexdashboard | R Markdown Format for Flexible Dashboards |
| FlexDir | Tools to Work with the Flexible Dirichlet Distribution |
| FlexGAM | Generalized Additive Models with Flexible Response Functions |
| flexiblas | 'FlexiBLAS' API Interface |
| flexlsx | Exporting 'flextable' to 'xlsx' Files |
| flexmet | Flexible Latent Trait Metrics using the Filtered Monotonic Polynomial Item Response Model |
| flexmix | Flexible Mixture Modeling |
| flexmixNL | Finite Mixture Modeling of Generalized Nonlinear Models |
| flexmsm | A General Framework for Flexible Multi-State Survival Modelling |
| flexOR | Flexible Odds Ratio Curves |
| FlexParamCurve | Tools to Fit Flexible Parametric Curves |
| flexpolyline | Flexible Polyline Encoding |
| FlexReg | Regression Models for Bounded Continuous and Discrete Responses |
| flexrsurv | Flexible Relative Survival Analysis |
| FlexScan | Flexible Scan Statistics |
| flexsiteboard | Breaks Single Page Applications from 'flexdashboard' in Multiple Files |
| flexsurv | Flexible Parametric Survival and Multi-State Models |
| flexsurvcure | Flexible Parametric Cure Models |
| flextable | Functions for Tabular Reporting |
| FlexVarJM | Estimate Joint Models with Subject-Specific Variance |
| FlickrAPI | Access to Flickr API |
| flifo | Don't Get Stuck with Stacks in R |
| flightplot | Plotting Flight Paths on Maps |
| FLightR | Reconstruct Animal Paths from Solar Geolocation Loggers Data |
| flightsbr | Download Flight and Airport Data from Brazil |
| flimo | Fixed Landscape Inference Method |
| flintyR | Simple and Flexible Tests of Sample Exchangeability |
| flip | Multivariate Permutation Tests |
| flipbookr | Parses Code, Creates Partial Code Builds, Delivers Code Movie |
| flipdownr | Implement a Countdown in 'RMarkdown' Documents and 'shiny' Applications |
| flipdownWidgets | A Wrapper of JavaScript Library 'flipdown.js' |
| flippant | Dithionite Scramblase Assay Analysis |
| flipr | Flexible Inference via Permutations in R |
| flipscores | Robust Score Testing in GLMs, by Sign-Flip Contributions |
| FLLat | Fused Lasso Latent Feature Model |
| float | 32-Bit Floats |
| flobr | Convert Files to and from Binary Objects (BLOBs) |
| flock | Process Synchronization Using File Locks |
| flocker | Flexible Occupancy Estimation with Stan |
| flood | Statistical Methods for the (Regional) Analysis of Flood Frequency |
| FloodFreqPlot | Flood Probability Plotting and Graphical Frequency Analysis |
| FLOPART | Functional Labeled Optimal Partitioning |
| flora | Tools for Interacting with the Brazilian Flora 2020 |
| florabr | Explore Flora e Funga do Brasil Database |
| FLORAL | Fit Log-Ratio Lasso Regression for Compositional Data |
| flow | View and Browse Code Using Flow Diagrams |
| flowchart | Tidy Flowchart Generator |
| FlowerMate | Reciprocity Indices for Style-Polymorphic Plants |
| flowmapblue | Flow Map Rendering |
| flowmapper | Draw Flows (Migration, Goods, Money, Information) on 'ggplot2' Plots |
| flowml | A Backend for a 'nextflow' Pipeline that Performs Machine-Learning-Based Modeling of Biomedical Data |
| flowr | Streamlining Design and Deployment of Complex Workflows |
| FlowRegEnvCost | The Environmental Costs of Flow Regulation |
| FlowScreen | Daily Streamflow Trend and Change Point Screening |
| flowTraceR | Tracing Information Flow for Inter-Software Comparisons in Mass Spectrometry-Based Bottom-Up Proteomics |
| flps | Fully-Latent Principal Stratification |
| FLR | Fuzzy Logic Rule Classifier |
| flsa | Path Algorithm for the General Fused Lasso Signal Approximator |
| FLSSS | Mining Rigs for Problems in the Subset Sum Family |
| Fluidigm | Handling Fluidigm Data |
| fluidsynth | Read and Play Digital Music (MIDI) |
| FluMoDL | Influenza-Attributable Mortality with Distributed-Lag Models |
| fluoSurv | Estimate Insect Survival from Fluorescence Data |
| fluspect | Fluspect-B |
| flux | Flux Rate Calculation from Dynamic Closed Chamber Measurements |
| fluxible | Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup |
| fluxweb | Estimate Energy Fluxes in Food Webs |
| flying | Simulation of Bird Flight Range |
| FlyingR | Simulation of Bird Flight Range |
| fma | Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998) |
| FMAdist | Frequentist Model Averaging Distribution |
| FMAT | The Fill-Mask Association Test |
| FMC | Factorial Experiments with Minimum Level Changes |
| FMCCSD | Efficient Estimation of Clustered Current Status Data |
| fmcmc | A friendly MCMC framework |
| fmdu | (Restricted) [external] Multidimensional Unfolding |
| FME | A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis |
| fmeffects | Model-Agnostic Interpretations with Forward Marginal Effects |
| fmerPack | Tools of Heterogeneity Pursuit via Finite Mixture Effects Model |
| fmesher | Triangle Meshes and Related Geometry Tools |
| fmf | Fast Class Noise Detector with Multi-Factor-Based Learning |
| FMM | Rhythmic Patterns Modeling by FMM Models |
| FMP | Filtered Monotonic Polynomial IRT Models |
| fmpcloudr | R Access to the 'FMP Cloud' and 'Financial Modeling Prep' API |
| FMradio | Factor Modeling for Radiomics Data |
| fmri | Analysis of fMRI Experiments |
| fmriqa | Functional MRI Quality Assurance Routines |
| fMRIscrub | Scrubbing and Other Data Cleaning Routines for fMRI |
| fMRItools | Routines for Common fMRI Processing Tasks |
| fmsb | Functions for Medical Statistics Book with some Demographic Data |
| FMsmsnReg | Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors |
| FMStable | Finite Moment Stable Distributions |
| fmt | Variance Estimation of FMT Method (Fully Moderated T-Statistic) |
| fmtr | Easily Apply Formats to Data |
| fMultivar | Rmetrics - Modeling of Multivariate Financial Return Distributions |
| fmx | Finite Mixture Parametrization |
| fnets | Factor-Adjusted Network Estimation and Forecasting for High-Dimensional Time Series |
| FNN | Fast Nearest Neighbor Search Algorithms and Applications |
| fNonlinear | Rmetrics - Nonlinear and Chaotic Time Series Modelling |
| FnR | Inbreeding and Numerator Relationship Coefficients |
| fntl | Numerical Tools for 'Rcpp' and Lambda Functions |
| FOCI | Feature Ordering by Conditional Independence |
| focusedMDS | Focused, Interactive Multidimensional Scaling |
| foghorn | Summarize CRAN Check Results in the Terminal |
| folda | Forward Stepwise Discriminant Analysis with Pillai's Trace |
| folders | Standardized Folder Names |
| folio | Datasets for Teaching Archaeology and Paleontology |
| fomantic.plus | Add Extra 'Fomantic UI' Components to 'shiny.semantic' |
| fontawesome | Easily Work with 'Font Awesome' Icons |
| fontBitstreamVera | Fonts with 'Bitstream Vera Fonts' License |
| fontcm | Computer Modern font for use with extrafont package |
| fontLiberation | Liberation Fonts |
| fontquiver | Set of Installed Fonts |
| foodingraph | Food Network Inference and Visualization |
| foodquotient | Food Quotient and Nutrient Analysis for HSFFQ |
| foodwebWrapper | Enhanced Wrapper to Show Which Functions Call What |
| footballpenaltiesBL | Penalties in the German Men's Football Bundesliga |
| footBayes | Fitting Bayesian and MLE Football Models |
| footprint | Calculate Air Travel Emissions |
| foqat | Field Observation Quick Analysis Toolkit |
| ForagingOrg | Organization Measures for Visual Foraging |
| forams | Foraminifera and Community Ecology Analyses |
| forcats | Tools for Working with Categorical Variables (Factors) |
| forceplate | Processing Force-Plate Data |
| forceR | Force Measurement Analyses |
| foreach | Provides Foreach Looping Construct |
| ForeCA | Forecastable Component Analysis |
| forecast | Forecasting Functions for Time Series and Linear Models |
| ForecastComb | Forecast Combination Methods |
| ForecastCombinations | Forecast Combinations |
| forecasteR | Time Series Forecast System |
| forecastHybrid | Convenient Functions for Ensemble Time Series Forecasts |
| forecastLSW | Forecasting Routines for Locally Stationary Wavelet Processes |
| forecastML | Time Series Forecasting with Machine Learning Methods |
| forecastSNSTS | Forecasting for Stationary and Non-Stationary Time Series |
| ForecastTB | Test Bench for the Comparison of Forecast Methods |
| FoReco | Forecast Reconciliation |
| ForeComp | Size-Power Tradeoff Visualization for Equal Predictive Ability of Two Forecasts |
| forecTheta | Forecasting Time Series by Theta Models |
| foreign | Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ... |
| forensicolors | Forensic Colors |
| forensIT | Information Theory Tools for Forensic Analysis |
| foreSIGHT | Systems Insights from Generation of Hydroclimatic Timeseries |
| forestat | Forest Carbon Sequestration and Potential Productivity Calculation |
| forestControl | Approximate False Positive Rate Control in Selection Frequency for Random Forest |
| forestdata | Download Forestry Data |
| ForestDisc | Forest Discretization |
| forestecology | Fitting and Assessing Neighborhood Models of the Effect of Interspecific Competition on the Growth of Trees |
| forested | Forest Attributes in Washington State |
| forestError | A Unified Framework for Random Forest Prediction Error Estimation |
| ForestFit | Statistical Modelling for Plant Size Distributions |
| ForestGapR | Tropical Forest Canopy Gaps Analysis |
| forestHES | Forest Health Evaluation System at the Forest Stand Level in China |
| forestinventory | Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories |
| forestly | Interactive Forest Plot |
| forestmangr | Forest Mensuration and Management |
| forestmodel | Forest Plots from Regression Models |
| forestplot | Advanced Forest Plot Using 'grid' Graphics |
| forestploter | Create a Flexible Forest Plot |
| forestr | Ecosystem and Canopy Structural Complexity Metrics from LiDAR |
| forestRK | Implements the Forest-R.K. Algorithm for Classification Problems |
| forestry | Reshape Data Tree |
| ForestTools | Tools for Analyzing Remote Sensing Forest Data |
| foretell | Projecting Customer Retention Based on Fader and Hardie Probability Models |
| forge | Casting Values into Shape |
| forImage | Foraminiferal Image Analysis and Test Measurement |
| ForIT | Functions to Estimate Tree Volume and Phytomass in the Italian Forest Inventory 2005 |
| formatBibtex | Format BibTeX Entries and Files |
| formatdown | Formatting Numbers in 'rmarkdown' Documents |
| formatR | Format R Code Automatically |
| formattable | Create 'Formattable' Data Structures |
| formatters | ASCII Formatting for Values and Tables |
| formods | 'Shiny' Modules for General Tasks |
| FormShare | A Simple Connection Between the 'FormShare App' and 'R' for Advanced Analytics |
| Formula | Extended Model Formulas |
| formula.tools | Programmatic Utilities for Manipulating Formulas, Expressions, Calls, Assignments and Other R Objects |
| formulaic | Dynamic Generation and Quality Checks of Formula Objects |
| formulops | Mathematical Operations on R Formula |
| FormulR | Comprehensive Tools for Drug Formulation Analysis and Visualization |
| forplo | Flexible Forest Plots |
| forrel | Forensic Pedigree Analysis and Relatedness Inference |
| forsearch | Diagnostic Analysis Using Forward Search Procedure for Various Models |
| forstringr | String Manipulation Package for Those Familiar with 'Microsoft Excel' |
| FORTLS | Automatic Processing of Terrestrial-Based Technologies Point Cloud Data for Forestry Purposes |
| fortunes | R Fortunes |
| forward | Robust Analysis using Forward Search |
| forwards | Data from Surveys Conducted by Forwards |
| fossil | Palaeoecological and Palaeogeographical Analysis Tools |
| fossilbrush | Automated Cleaning of Fossil Occurrence Data |
| FossilSim | Simulation and Plots for Fossil and Taxonomy Data |
| FossilSimShiny | Shiny Application for 'FossilSim' |
| foto | Fourier Transform Textural Ordination |
| foundry | 'Palantir Foundry' Software Development Kit |
| FourgameteP | FourGamete Test |
| fourierin | Computes Numeric Fourier Integrals |
| fourPNO | Bayesian 4 Parameter Item Response Model |
| FourScores | A Game for Human vs. Human or Human vs. AI |
| FourWayHMM | Parsimonious Hidden Markov Models for Four-Way Data |
| fpa | Spatio-Temporal Fixation Pattern Analysis |
| fPASS | Power and Sample Size for Projection Test under Repeated Measures |
| fpc | Flexible Procedures for Clus |